Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes, Gand, Mathieu, Indre Navickaite, Lee-Julia Bartsch, Josephine Grützke, Søren Overballe-Petersen, Astrid Rasmussen, Saria Otani, Valeria Michelacci, Rodríguez Matamoros, Bosco, Bruno González-Zorn, et al. , Frontiers in Microbiology, Apr-04-2024, Volume 15, (2024)

Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion, Gand, Mathieu, Bloemen Bram, Vanneste Kevin, Roosens Nancy, and De Keersmaecker Sigrid C. J. , BMC Genomics, Jan-12-2023, Volume 24, Issue 1, (2023)

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillanceAbstract, Bloemen, Bram, Gand Mathieu, Vanneste Kevin, Marchal Kathleen, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Scientific Reports, Jan-12-2023, Volume 13, Issue 1, (2023)

Assessment of the Feasibility of a Future Integrated Larger-Scale Epidemiological Study to Evaluate Health Risks of Air Pollution Episodes in Children., Nauwelaerts, S., De Cremer Koen, Bustos Sierra Natalia, Gand Mathieu, Van Geel D., Delvoye Maud, Vandermassen Els, Vercauteren Jordy, Stroobants Christophe, Bernard Alfred, et al. , Int J Environ Res Public Health, 2022 Jul 12, Volume 19, Issue 14, (2022)

Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study, Buytaers, Florence E., Verhaegen Bavo, Gand Mathieu, D'aes Jolien, Vanneste Kevin, Roosens Nancy, Marchal Kathleen, Denayer Sarah, and De Keersmaecker Sigrid C. J. , Foods, Jan-11-2022, Volume 11, Issue 21, (2022)

Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities, AbuOun, Manal, Otani Saria, Navickaite Indre, Gand Mathieu, Bloemen Bram, Vanneste Kevin, Michelacci Valeria, Matamoros Bosco Rodríguez, Roosens Nancy, and De Keersmaecker Sigrid C. J. , 13/12/2022, Zenodo, p.12, (2022)

Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard, De Keersmaecker, Sigrid C. J., Gand Mathieu, Navickaite Indre, Gruetzke Josephine, Bartsch Lee-Julia, Otani Saria, Garofolo Giuliano, Di Domenico Marco, Michelacci Valeria, Matamoros Bosco R., et al. , 13/12/2022, Zenodo, p.44, (2022)

Report on initial findings of on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens, AbuOun, Manal, Navickaite Indre, Wilkes Thomas I., Di Domenico Marco, Garofolo Giuliano, Bloemen Bram, Gand Mathieu, Roosens Nancy, Vanneste Kevin, De Keersmaecker Sigrid C. J., et al. , 13/12/2022, Zenodo, p.12, (2022)

Shotgun metagenomics as a ONE Health tool for better protecting human health, Gand, Mathieu, Buytaers Florence E., Bloemen Bram, Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Mattheus Wesley, Piérard Denis, Bogaerts Bert, Marchal Kathleen, et al. , EFSA One, 21/06/2022, Issue EFSA, (2022)

Deepening of In Silico Evaluation of SARS-CoV-2 Detection RT-qPCR Assays in the Context of New Variants, Gand, Mathieu, Vanneste Kevin, Thomas Isabelle, Van Gucht Steven, Capron Arnaud, Herman Philippe, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Genes, Jan-04-2021, Volume 12, Issue 4, (2021)

Review on current scientific literature and overview of commercially available methods for on-site DNA isolation, AbuOun, Manal, Navickaite Indre, De Keersmaecker Sigrid C. J., Gand Mathieu, Persson Søren, Michelacci Valeria, Marotta Francesca, Di Domenico Marco, Garofolo Giuliano, and Brouwer Michael , 28/04/2021, Zenodo, p.15, (2021)

Strategy to Develop and Evaluate a Multiplex RT-ddPCR in Response to SARS-CoV-2 Genomic Evolution., Van Poelvoorde, Laura, Gand Mathieu, Fraiture Marie-Alice, De Keersmaecker Sigrid C. J., Verhaegen Bavo, Van Hoorde Koenraad, Cay Ann Brigitte, Balmelle Nadège, Herman Philippe, and Roosens Nancy , Curr Issues Mol Biol, 2021 Nov 06, Volume 43, Issue 3, (2021)

Development of a genoserotyping system for the identification of Salmonella serotypes, Gand, Mathieu , 2020, Ghent, p.185, (2020)

A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium., Gand, Mathieu, Mattheus Wesley, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, Bertrand Sophie, and De Keersmaecker Sigrid C. J. , Food Microbiol, 2020 Oct, Volume 91, (2020)

A multiplex oligonucleotide ligation-PCR method for the genoserotyping of common Salmonella using a liquid bead suspension assay, Gand, Mathieu, Mattheus Wesley, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , Food Microbiology, Jan-05-2020, Volume 87, (2020)

Use of Whole Genome Sequencing Data for a First in Silico Specificity Evaluation of the RT-qPCR Assays Used for SARS-CoV-2 Detection., Gand, Mathieu, Vanneste Kevin, Thomas Isabelle, Van Gucht Steven, Capron Arnaud, Herman Philippe, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Int J Mol Sci, 2020 Aug 04, Volume 21, Issue 15, (2020)

Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java., Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , Appl Microbiol Biotechnol, 2019 Jun, Volume 103, Issue 12, (2019)

A multiplex oligonucleotide ligation-PCR method using the Luminex technology for the geno-serotyping of the most common Salmonella in Belgium, Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , ECCMID, 2018, Madrid, Spain, (2018)

Development of a real-time PCR test for the geno-serotyping of Salmonella Paratyphi B and its variant Java, Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , BSFM conference, 2017, Brussels, Belgium, (2017)

Salmonella infections: identification techniques for successful investigations, Bertrand, Sophie, Mattheus Wesley, Ceyssens Pieter-Jan, Gand Mathieu, Vanhoof Raymond, Botteldoorn N, Denayer Sarah, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Labinfo, 2017, Volume 16, Number 47, Belgium, (2017)