Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches, Van Laere, Yari, Fraiture Marie-Alice, Gobbo Andrea, De Keersmaecker Sigrid C. J., Marchal Kathleen, Roosens Nancy, and Vanneste Kevin , Frontiers in Microbiology, Jul-01-2027, Volume 16, (2025)

be.Prepared: Setting up a cloud-based bioinformatics platform and coupled NRC usability platform for integrated genomic-epidemiological analysis at a national level, Gori, A., Kelchtermans Michael, Millis Kato, Van Laer Amber, Mairiaux Eric, initiative Members of the H. E. R., Van den Bossche An, Ceyssens Pieter-Jan, Mattheus Wesley, Mathys Vanessa, et al. , Applied Bioinformatics and Public Health Microbiology, 22/05/2025, Hixton, UK, (2025)

Development of a shotgun metagenomics workflow for the comprehensive surveillance of biological impurities in vitamin-containing food products, Orval, Rik, Jolien D'aes, De Keersmaecker Sigrid C. J., Vanneste Kevin, Deforce Dieter, Roosens Nancy, and Fraiture Marie-Alice , LWT, Jan-09-2025, Volume 231, (2025)

Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection., Bogaerts, Bert, Van Braekel Julien, Van Uffelen Alexander, D'aes Jolien, Godfroid Maxime, Delcourt Thomas, Kelchtermans Michael, Milis Kato, Goeders Nathalie, De Keersmaecker Sigrid C. J., et al. , BMC Genomics, 2025 Jan 08, Volume 26, Issue 1, (2025)

Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products, D'aes, Jolien, Fraiture Marie-Alice, Bogaerts Bert, Van Laere Yari, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , Food Chemistry: Molecular Sciences, June-2025, Volume 10, (2025)

Recent and chronic ambient air pollution exposure in association with telomere length and mitochondrial DNA content in the general population, Pauline, Hautekiet, Nawrot Tim S., Martens Dries S., Bijnens Esmée M., De Keersmaecker Sigrid C. J., Van der Heyden Johan, De Clercq Eva M., and D. Saenen, Nelly , Environmental Research, Jan-07-2025, Volume 276, (2025)

Salmonella spp. as a be.Prepared Case Study for Integrating Microbial Genomic and Health Data in Public Health Surveillance, Van Laer, Amber, Commans Florian, Mattheus Wesley, Van den Bossche An, Ceyssens Pieter-Jan, Vanneste Kevin, De Keersmaecker Sigrid C. J., Gori A., Kelchtermans Michael, Milis Kato, et al. , Scientific seminar for Infectious Diseases, 22/05/2025, Brussels, Belgium, (2025)

Whole-genome sequencing of soil- and foodborne Bacillus cereus sensu lato indicates no clear association between their virulence repertoire, genomic diversity and food matrix, Jacobs, Bram, Bert Bogaerts, Marie Verhaegen, Kevin Vanneste, De Keersmaecker Sigrid C. J., Roosens Nancy, Rajkovic Andreja, Mahillon Jacques, Van Nieuwenhuysen Tom, and Van Hoorde Koenraad , International Journal of Food Microbiology, Jan-08-2025, Volume 439, (2025)

Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities, Van Uffelen, Alexander, Posadas Andrés, Roosens Nancy, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Vanneste Kevin , Scientific Data, 2024/08/10, Volume 11, Issue 1, (2024)

be.Prepared: An architecture to increase Belgian integration of health data as a way of strengthening preparedness for infectious diseases, Van Laer, Amber, Kelchtermans Michael, Millis Kato, Gori A., Van Cauteren Dieter, Brondeel Ruben, De Keersmaecker Sigrid C. J., Herman Philippe, Roosens Nancy, De Ridder Karin, et al. , The Belgian Presidency of the Council of the European Union, March 2024, (2024)

be.Prepared to increase Belgian integration of health data as a way of strengthening preparedness for infectious diseases, Masset, Heleen, Van Laer Amber, Kelchtermans Michael, Millis Kato, Gori A., Winand Raf, De Keersmaecker Sigrid C. J., Roosens Nancy, Herman Philippe, Brondeel Ruben, et al. , ESCMID Global 2024, 27/04/2024, Barcelona, (2024)

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens., Bogaerts, Bert, Van den Bossche An, Verhaegen Bavo, Delbrassinne Laurence, Mattheus Wesley, Nouws Stéphanie, Godfroid Maxime, Hoffman Stefan, Roosens Nancy, De Keersmaecker Sigrid C. J., et al. , J Clin Microbiol, 2024 Mar 05, (2024)

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens., Bogaerts, Bert , J Clin Microbiol, 2024 Mar 05, (2024)

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens., Bogaerts, Bert , J Clin Microbiol, 2024 Mar 05, (2024)

Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens., Bogaerts, Bert , J Clin Microbiol, 2024 Mar 05, (2024)

Development of a reverse transcriptase digital droplet polymerase chain reaction?based approach for SARS?CoV?2 variant surveillance in wastewater, Van Poelvoorde, Laura, Gobbo Andrea, Nauwelaerts S., Verhaegen Bavo, Lesenfants Marie, Janssens Raphael, Hutse Veronik, Fraiture Marie-Alice, De Keersmaecker Sigrid C. J., Herman Philippe, et al. , Water Environment Research, Jan-03-2024, Volume 96, Issue 3, (2024)

Genomic comparison between  and  and  analysis of peptide-based biomarkers for serodiagnosis., Moens, Charlotte, Bogaerts Bert, Lorente-Leal Victor, Vanneste Kevin, De Keersmaecker Sigrid C. J., Roosens Nancy, Mostin Laurent, Fretin David, and Marché Sylvie , Front Vet Sci, 2024, Volume 11, (2024)

How to develop a controlled human infection model for Clostridioides difficile, Hensen, Annefleur D. O., Vehreschild Maria J. G. T., Gerding Dale N., Krut Oleg, Chen Wilbur, Young Vincent B., Tzipori Saul, Solbach Philipp, Gibani Malick Mahdi, Chiu Christopher, et al. , Clinical Microbiology and Infection, Jan-08-2024, (2024)

The potential of including the microbiome as biomarker in population-based health studies: methods and benefits, Buytaers, Florence E., Berger Nicolas, Van der Heyden Johan, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Frontiers in Public Health, (2024)

Sheeppox virus genome sequences from the European outbreaks in Spain, Bulgaria, and Greece in 2022-2024., Breman, Floris C., Haegeman Andy, Philips Wannes, Kre?i? Nina, Hoffman Stefan, De Keersmaecker Sigrid C. J., Roosens Nancy, Montserrat Agüero, Villalba Rubén, Miteva Aleksandra, et al. , Arch Virol, 2024 Oct 30, Volume 169, Issue 11, (2024)

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling, Buytaers, Florence E., Verhaegen Bavo, Van Nieuwenhuysen Tom, Roosens Nancy, Vanneste Kevin, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Frontiers in Microbiology, (2024)

Strategy to develop and validate digital droplet PCR methods for global antimicrobial resistance wastewater surveillance, Gobbo, Andrea, Fraiture Marie-Alice, Van Poelvoorde Laura, De Keersmaecker Sigrid C. J., Garcia-Graells Cristina, Van Hoorde Koenraad, Verhaegen Bavo, Huwaert Astrid, Maloux Hadrien, Hutse Veronik, et al. , Water Environment Research, Jan-11-2024, Volume 96, Issue 11, (2024)

Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes, Gand, Mathieu, Indre Navickaite, Bartsch Lee-Julia, Grützke Josephine, Overballe-Petersen Søren, Rasmussen Astrid, Otani Saria, Michelacci Valeria, Rodríguez Matamoros, Bosco, González-Zorn Bruno, et al. , Frontiers in Microbiology, Apr-04-2024, Volume 15, (2024)

Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion, Gand, Mathieu, Bloemen Bram, Vanneste Kevin, Roosens Nancy, and De Keersmaecker Sigrid C. J. , BMC Genomics, Jan-12-2023, Volume 24, Issue 1, (2023)

Contaminations of AMR genes linked to the presence of genetically modified microorganisms in the food and feed chain , Fraiture, Marie-Alice, De Keersmaecker Sigrid C. J., and Roosens Nancy , Brussels, Belgium, (2023)

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillanceAbstract, Bloemen, Bram, Gand Mathieu, Vanneste Kevin, Marchal Kathleen, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Scientific Reports, Jan-12-2023, Volume 13, Issue 1, (2023)

A new open strategy for impurity surveillance of commercial microbial fermentation food products, Fraiture, Marie-Alice, Roosens Nancy, Papazova N., De Keersmaecker Sigrid C. J., Vanneste Kevin, Orval Rik, Van Laere Yari, Debode Frédéric, De Loose Marc, Van Poucke Christof, et al. , Brussels, Belgium, (2023)

Novel threats- State of the art of synthetic biology, T. Johansen, Bjordal, Madslien E.H., Forsman M., Ekström F., Fykse E.M., De Keersmaecker Sigrid C. J., Roosens Nancy, Vanneste Kevin, Fraiture Marie-Alice, Palyi B., et al. , Munich, Germany, (2023)

Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing, Bogaerts, Bert, Fraiture Marie-Alice, Van Nieuwenhuysen Tom, Jacobs Bram, Van Hoorde Koenraad, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , Frontiers in Microbiology, Sep-06-2024, Volume 14, (2023)

Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling, Buytaers, Florence E., Verhaegen Bavo, Van Nieuwenhuysen Tom, Roosens Nancy, Vanneste Kevin, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , BSFM, 2023-10-13, Brussels, Belgium, (2023)

Targeted High-Throughput Sequencing Enables the Detection of Single Nucleotide Variations in CRISPR/Cas9 Gene-Edited Organisms, Fraiture, Marie-Alice, D'aes Jolien, Guiderdoni Emmanuel, Meunier Anne-Cécile, Delcourt Thomas, Hoffman Stefan, Vandermassen Els, De Keersmaecker Sigrid C. J., Vanneste Kevin, and Roosens Nancy , Foods, Jan-02-2023, Volume 12, Issue 3, (2023)

Transforming Shiga toxin-producing  surveillance through whole genome sequencing in food safety practices., Nouws, Stéphanie, Verhaegen Bavo, Denayer Sarah, Crombé Florence, Piérard Denis, Bogaerts Bert, Vanneste Kevin, Marchal Kathleen, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Front Microbiol, 2023, Volume 14, (2023)

Using a combination of short and long read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum-beta-lactamases (ESBL) in clinical Shigella and Salmonella isolates in Belgium, Berbers, Bas, Vanneste Kevin, Roosens Nancy, Marchal K., Ceyssens Pieter-Jan, and De Keersmaecker Sigrid C. J. , Microbial Genomics, 23/01/2023, Volume 9:000925, Number 23, (2023)

Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium, Berbers, Bas, Vanneste Kevin, Roosens Nancy, Marchal Kathleen, Ceyssens Pieter-Jan, and De Keersmaecker Sigrid C. J. , Microbial Genomics, Nov-01-2024, Volume 9, Issue 1, (2023)

Whole-genome sequencing-based phylogenomic investigation of unexpected Bacillus cereus contaminations collected from commercial vitamin B2 food and feed additives sold on the Belgian market, Bogaerts, Bert, Fraiture Marie-Alice, Huwaert Astrid, Van Nieuwenhuysen Tom, Jacobs Bram, Van Hoorde Koenraad, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , Applied Bioinformatics and Public Health Microbiology , 2023, Hinxton, OK, (2023)

Whole-Genome Sequencing-Based Screening of MRSA in Patients and Healthcare Workers in Public Hospitals in Benin., Yehouenou, Laurence Carine, Bogaerts Bert, Vanneste Kevin, De Keersmaecker Sigrid C. J., Roosens Nancy, Kpangon Arsène A., Dissou Affolabi, Simon Anne, Dossou Francis Moise, and Dalleur Olivia , Microorganisms, 2023 Jul 31, Volume 11, Issue 8, (2023)

Assessment of the Feasibility of a Future Integrated Larger-Scale Epidemiological Study to Evaluate Health Risks of Air Pollution Episodes in Children., Nauwelaerts, S., De Cremer Koen, Bustos Sierra Natalia, Gand Mathieu, Van Geel D., Delvoye Maud, Vandermassen Els, Vercauteren Jordy, Stroobants Christophe, Bernard Alfred, et al. , Int J Environ Res Public Health, 2022 Jul 12, Volume 19, Issue 14, (2022)

Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database, Saltykova, Assia, Van Braekel Julien, Papazova N., Fraiture Marie-Alice, Deforce Dieter, Vanneste Kevin, De Keersmaecker Sigrid C. J., and Roosens Nancy , Food Chemistry: Molecular Sciences, Jan-07-2022, Volume 4, (2022)

A general approach to identify low-frequency variants within influenza samples collected during routine surveillance., Van Poelvoorde, Laura, Delcourt Thomas, Vuylsteke Marnik, De Keersmaecker Sigrid C. J., Thomas Isabelle, Van Gucht Steven, Saelens Xavier, Roosens Nancy, and Vanneste Kevin , Microb Genom, 2022 09, Volume 8, Issue 9, (2022)

The key role of WGS-based surveillance of Listeria monocytogenes in both human and food isolates in outbreak investigations, Van den Bossche, An, De Keersmaecker Sigrid C. J., Mattheus Wesley, Roosens Nancy, Bogaerts Bert, Vanneste Kevin, Van Hoorde Koenraad, and Verhaegen Bavo , 26th Conference on Food Microbiology, 13-14/10/2022, Issue BSFM, Brussels, Belgium, (2022)

Listeria monocytogenes isolates from Cornu aspersum snails: Whole genome-based characterization and host-pathogen interactions in a snail infection model., Charalampos, Kotzamanidis, Andigoni Malousi, Dushku Esmeralda, Dobly Alexandre, De Keersmaecker Sigrid C. J., Roosens Nancy, Argyro Karathodorou, Staikou Alexandra, Zdragas Antonios, and Yiangou Minas , Fish Shellfish Immunol, 2022 Apr, Volume 123, (2022)

Metagenomic Characterization of Multiple Genetically Modified Bacillus Contaminations in Commercial Microbial Fermentation Products, D'aes, Jolien, Fraiture Marie-Alice, Bogaerts Bert, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , Life, 25/11/2022, Volume 12, Issue 12, (2022)

Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study, Buytaers, Florence E., Verhaegen Bavo, Gand Mathieu, D'aes Jolien, Vanneste Kevin, Roosens Nancy, Marchal Kathleen, Denayer Sarah, and De Keersmaecker Sigrid C. J. , Foods, Jan-11-2022, Volume 11, Issue 21, (2022)

Noninvasive integrative approach applied to children in the context of recent air pollution exposure demonstrates association between fractional exhaled nitric oxide (FeNO) and urinary CC16., Nauwelaerts, S., Van Goethem Nina, De Cremer Koen, Bustos Sierra Natalia, Vercauteren Jordy, Stroobants Christophe, Bernard Alfred, Nawrot Tim, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Environ Res, 2022 Sep 30, Volume 216, Issue Pt 1, (2022)

Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities, AbuOun, Manal, Otani Saria, Navickaite Indre, Gand Mathieu, Bloemen Bram, Vanneste Kevin, Michelacci Valeria, Matamoros Bosco Rodríguez, Roosens Nancy, and De Keersmaecker Sigrid C. J. , 13/12/2022, Zenodo, p.12, (2022)

Population Analysis of O26 Shiga Toxin-Producing  Causing Hemolytic Uremic Syndrome in Italy, 1989-2020, Through Whole Genome Sequencing., Michelacci, Valeria, Montalbano Di Filippo Margherita, Gigliucci Federica, Arancia Silvia, Chiani Paola, Minelli Fabio, Roosens Nancy, De Keersmaecker Sigrid C. J., Bogaerts Bert, Vanneste Kevin, et al. , Front Cell Infect Microbiol, 2022, Volume 12, (2022)

Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard, De Keersmaecker, Sigrid C. J., Gand Mathieu, Navickaite Indre, Gruetzke Josephine, Bartsch Lee-Julia, Otani Saria, Garofolo Giuliano, Di Domenico Marco, Michelacci Valeria, Matamoros Bosco R., et al. , 13/12/2022, Zenodo, p.44, (2022)

Report on initial findings of on-site diagnostic tests and IT solutions for human clinical, veterinary and environmental samples for early warning of emerging resistant pathogens, AbuOun, Manal, Navickaite Indre, Wilkes Thomas I., Di Domenico Marco, Garofolo Giuliano, Bloemen Bram, Gand Mathieu, Roosens Nancy, Vanneste Kevin, De Keersmaecker Sigrid C. J., et al. , 13/12/2022, Zenodo, p.12, (2022)

Report on the feasibility of using Hi-C sequencing for metagenomics to define the context of AMR genes, De Keersmaecker, Sigrid C. J., Grützke Josephine, Deneke Carlus, Fischer Jennie, Bartsch Lee Julia, Bloemen Bram, Vanneste Kevin, D'aes Jolien, Roosens Nancy, and AbuOun Manal , 13/12/2022, Zenodo, p.10, (2022)

A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products, Buytaers, Florence E., Fraiture Marie-Alice, Berbers Bas, Vandermassen Els, Hoffman Stefan, Papazova N., Vanneste Kevin, Marchal Kathleen, Roosens Nancy, and De Keersmaecker Sigrid C. J. , ONE Conference 2022, 21/06/2022, Issue EFSA, (2022)

Shotgun metagenomics as a ONE Health tool for better protecting human health, Gand, Mathieu, Buytaers Florence E., Bloemen Bram, Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Mattheus Wesley, Piérard Denis, Bogaerts Bert, Marchal Kathleen, et al. , EFSA One, 21/06/2022, Issue EFSA, (2022)

Urinary CC16, a potential indicator of lung integrity and inflammation, increases in children after short-term exposure to PM/PM and is driven by the CC16 38GG genotype., Nauwelaerts, S., Van Goethem Nina, Ureña Berta Tenas, De Cremer Koen, Bernard Alfred, Saenen Nelly D., Nawrot Tim S., Roosens Nancy, and De Keersmaecker Sigrid C. J. , Environ Res, 2022 09, Volume 212, Issue Pt B, (2022)

Whole-Genome Sequence Approach and Phylogenomic Stratification Improve the Association Analysis of Mutations With Patient Data in Influenza Surveillance, Van Poelvoorde, Laura, Vanneste Kevin, De Keersmaecker Sigrid C. J., Thomas Isabelle, Van Goethem Nina, Van Gucht Steven, Saelens Xavier, and Roosens Nancy , Frontiers in Microbiology, Jul-04-2023, Volume 13, (2022)

Whole-Genome Sequence Approach and Phylogenomic Stratification Improve the Association Analysis of Mutations With Patient Data in Influenza Surveillance., Van Poelvoorde, Laura, Vanneste Kevin, De Keersmaecker Sigrid C. J., and Roosens Nancy , Front Microbiol, 2022, Volume 13, (2022)

Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak, Buytaers, Florence E., Saltykova Assia, Mattheus Wesley, Verhaegen Bavo, Roosens Nancy, Vanneste Kevin, Laisnez Valeska, Hammami Naïma, Pochet Brigitte, Cantaert Vera, et al. , Microbial Genomics, Jul-04-2021, Volume 7, Issue 4, (2021)

A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches, Bogaerts, Bert, Delcourt Thomas, Soetaert Karine, Boarbi Samira, Ceyssens Pieter-Jan, Winand Raf, Van Braekel Julien, De Keersmaecker Sigrid C. J., Roosens Nancy, Marchal Kathleen, et al. , J Clin Microbiol, 2021 Mar 31, (2021)

Case Report: Multidrug Resistant Raoultella ornithinolytica in a Septicemic Calf, Pas, Mathilde L., Vanneste Kevin, Bokma Jade, Van Driessche Laura, De Keersmaecker Sigrid C. J., Roosens Nancy, Haesebrouck Freddy, Boyen Filip, and Pardon Bart , Front Vet Sci, 2021, Volume 8, (2021)

Characterization of Genetically Modified Microorganisms Using Short- and Long-Read Whole-Genome Sequencing Reveals Contaminations of Related Origin in Multiple Commercial Food Enzyme Products., D'aes, Jolien, Fraiture Marie-Alice, Bogaerts Bert, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , Foods, 2021 Oct 30, Volume 10, Issue 11, (2021)

Coverage of the national surveillance system for human Salmonella infections, Belgium, 2016-2020., Van Goethem, Nina, Van den Bossche An, Ceyssens Pieter-Jan, Lajot Adrien, Coucke Wim, Vernelen Kris, Roosens Nancy, De Keersmaecker Sigrid C. J., Van Cauteren Dieter, and Mattheus Wesley , PLoS One, 2021, Volume 16, Issue 8, (2021)

Deepening of In Silico Evaluation of SARS-CoV-2 Detection RT-qPCR Assays in the Context of New Variants, Gand, Mathieu, Vanneste Kevin, Thomas Isabelle, Van Gucht Steven, Capron Arnaud, Herman Philippe, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Genes, Jan-04-2021, Volume 12, Issue 4, (2021)

Development of a multiplex mass spectrometry method for simultaneous quantification of urinary proteins related to respiratory health, Nauwelaerts, S., Roosens Nancy, Bernard Alfred, De Keersmaecker Sigrid C. J., and De Cremer Koen , Scientific Reports, Jan-12-2021, Volume 11, Issue 1, (2021)

Epidemiology of the Staphylococcus aureus CA-MRSA USA300 in Belgium, Argudín, Maria A., Deplano Ariane, Nonhoff Claire, Yin Nicolas, Michel Charlotte, Martiny Delphine, De Keersmaecker Sigrid C. J., and Hallin Marie , Eur J Clin Microbiol Infect Dis, 2021 Nov, Volume 40, Issue 11, (2021)

Evaluation of the added value of viral genomic information for predicting severity of influenza infection, Van Goethem, Nina, Robert Annie, Bossuyt Nathalie, Van Poelvoorde Laura, Quoilin Sophie, De Keersmaecker Sigrid C. J., Devleesschauwer Brecht, Thomas Isabelle, Vanneste Kevin, Roosens Nancy, et al. , BMC Infectious Diseases, Jan-12-2021, Volume 21, Issue 1, (2021)

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations., Bogaerts, Bert, Winand Raf, Van Braekel Julien, Hoffman Stefan, Roosens Nancy, De Keersmaecker Sigrid C. J., Marchal Kathleen, and Vanneste Kevin , Microb Genom, 2021 11, Volume 7, Issue 11, (2021)

First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin., Yehouenou, Carine, Bogaerts Bert, Vanneste Kevin, Roosens Nancy, De Keersmaecker Sigrid C. J., Marchal Kathleen, Dissou Affolabi, Soleimani Reza, Rodriguez-Villalobos Hector, Van Bambeke Françoise, et al. , Ann Clin Microbiol Antimicrob, 2021 Jan 06, Volume 20, Issue 1, (2021)

Key considerations for the implementation of high throughput sequencing based metagenomics (mNGS) in diagnostic clinical, food and veterinary labs : a no-nonsense pointer. the Metastava consortium, Van Borm, Steven, Vandenbussche Frank, De Clercq Kris, Haegeman Andy, De Keersmaecker Sigrid C. J., Vanneste Kevin, Peeters Michael, Van Gucht Steven, Blanchard Yannick, Pavio Nicole, et al. , 2021, (2021)

Large diversity of linezolid-resistant isolates discovered in food-producing animals through linezolid selective monitoring in Belgium in 2019., Timmermans, Michaël, Bogaerts Bert, Vanneste Kevin, De Keersmaecker Sigrid C. J., Roosens Nancy, Kowalewicz Carole, Simon Guillaume, M Argudín Angeles, Deplano Ariane, Hallin Marie, et al. , J Antimicrob Chemother, 2021 Oct 21, (2021)

Large diversity of linezolid-resistant isolates discovered in food-producing animals through linezolid selective monitoring in Belgium in 2019, Timmermans, Michaël, Bogaerts Bert, Vanneste Kevin, De Keersmaecker Sigrid C. J., Roosens Nancy, Kowalewicz Carole, Simon Guillaume, Argudín Maria A., Deplano Ariane, Hallin Marie, et al. , Journal of Antimicrobial Chemotherapy, Sep-10-2022, Volume 77, Issue 1, (2021)

Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation., Bogaerts, Bert, Winand Raf, Van Braekel Julien, Mattheus Wesley, De Keersmaecker Sigrid C. J., Roosens Nancy, Marchal Kathleen, Vanneste Kevin, and Ceyssens Pieter-Jan , Microorganisms, 2021 Apr 06, Volume 9, Issue 4, (2021)

Reduced humoral immune response after BNT162b2 coronavirus disease 2019 messenger RNA vaccination in cancer patients under antineoplastic treatment., Peeters, M , ESMO Open, 2021 Oct, Volume 6, Issue 5, (2021)

Retrospective evaluation of routine whole genome sequencing of Mycobacterium tuberculosis at the Belgian National Reference Center, 2019., Soetaert, Karine, Ceyssens Pieter-Jan, Boarbi Samira, Bogaerts Bert, Delcourt Thomas, Vanneste Kevin, De Keersmaecker Sigrid C. J., Roosens Nancy, Vodolazkaia Alexandra, Mukovnikova Marina, et al. , Acta Clin Belg, 2021 Nov 09, (2021)

Review on current scientific literature and overview of commercially available methods for on-site DNA isolation, AbuOun, Manal, Navickaite Indre, De Keersmaecker Sigrid C. J., Gand Mathieu, Persson Søren, Michelacci Valeria, Marotta Francesca, Di Domenico Marco, Garofolo Giuliano, and Brouwer Michael , 28/04/2021, Zenodo, p.15, (2021)

A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products, Buytaers, Florence E., Fraiture Marie-Alice, Berbers Bas, Vandermassen Els, Hoffman Stefan, Papazova N., Vanneste Kevin, Marchal Kathleen, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Food Chemistry: Molecular Sciences, Jan-07-2021, Volume 2, (2021)

Strategy and Performance Evaluation of Low-Frequency Variant Calling for SARS-CoV-2 Using Targeted Deep Illumina Sequencing, Van Poelvoorde, Laura, Delcourt Thomas, Coucke Wim, Herman Philippe, De Keersmaecker Sigrid C. J., Saelens Xavier, Roosens Nancy, and Vanneste Kevin , Frontiers in Microbiology, Jan-10-2022, Volume 12, (2021)

Strategy to Develop and Evaluate a Multiplex RT-ddPCR in Response to SARS-CoV-2 Genomic Evolution., Van Poelvoorde, Laura, Gand Mathieu, Fraiture Marie-Alice, De Keersmaecker Sigrid C. J., Verhaegen Bavo, Van Hoorde Koenraad, Cay Ann Brigitte, Balmelle Nadège, Herman Philippe, and Roosens Nancy , Curr Issues Mol Biol, 2021 Nov 06, Volume 43, Issue 3, (2021)

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies, Buytaers, Florence E., Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Vanneste Kevin, Roosens Nancy, Piérard Denis, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Frontiers in Microbiology, May-11-2021, Volume 12, (2021)

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods, Bogaerts, Bert, Nouws Stéphanie, Verhaegen Bavo, Denayer Sarah, Van Braekel Julien, Winand Raf, Fu Qiang, Crombé Florence, Piérard Denis, Marchal Kathleen, et al. , Microbial Genomics, Jan-03-2021, Volume 7, Issue 3, (2021)

Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning Outbreaks, Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Laeremans Lasse, Marchal Kathleen, Roosens Nancy, Vanneste Kevin, and De Keersmaecker Sigrid C. J. , Frontiers in Microbiology, Feb-11-2021, Volume 12, (2021)

Whole-Genome Sequencing-Based Antimicrobial Resistance Characterization and Phylogenomic Investigation of 19 Multidrug-Resistant and Extended-Spectrum Beta-Lactamase-Positive Escherichia coli Strains Collected From Hospital Patients in Benin in 2019., Yehouenou, Carine Laurence, Bogaerts Bert, De Keersmaecker Sigrid C. J., Roosens Nancy, Marchal Kathleen, Tchiakpe Edmond, Dissou Affolabi, Simon Anne, Dossou Francis Moise, Vanneste Kevin, et al. , Front Microbiol, 2021, Volume 12, (2021)

Whole-genome-based phylogenomic analysis of the Belgian 2016-2017 influenza A(H3N2) outbreak season allows improved surveillance., Van Poelvoorde, Laura, Bogaerts Bert, Qiang Fu, De Keersmaecker Sigrid C. J., Thomas Isabelle, Van Goethem Nina, Van Gucht Steven, Winand Raf, Saelens Xavier, Roosens Nancy, et al. , Microb Genom, 2021 09, Volume 7, Issue 9, (2021)

The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country., Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Crombé Florence, De Rauw Klara, Piérard Denis, Marchal Kathleen, Vanneste Kevin, Roosens Nancy, et al. , Foods, 2020 Aug 01, Volume 9, Issue 8, (2020)

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus, Berbers, Bas, Saltykova Assia, Garcia-Graells Cristina, Philipp Patrick, Arella Fabrice, Marchal Kathleen, Winand Raf, Vanneste Kevin, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Scientific Reports, Jan-12-2020, Volume 10, Issue 1, (2020)

Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination., Berbers, Bas, Ceyssens Pieter-Jan, Bogaerts Pierre, Vanneste Kevin, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Antibiotics (Basel), 2020 Aug 11, Volume 9, Issue 8, (2020)

First detection of a plasmid located carbapenem resistant blaVIM-1 gene in E. coli isolated from meat products at retail in Belgium in 2015, Garcia-Graells, Cristina, Berbers Bas, Verhaegen Bavo, Vanneste Kevin, Marchal Kathleen, Roosens Nancy, Botteldoorn N, and De Keersmaecker Sigrid C. J. , International Journal of Food Microbiology, Jan-07-2020, Volume 324, (2020)

Food Chemistry, Function and AnalysisDNA Techniques to Verify Food Authenticity CHAPTER 8. GMO Detection and Identification Using Next-generation Sequencing, Fraiture, Marie-Alice, Papazova N., Vanneste Kevin, De Keersmaecker Sigrid C. J., and Roosens Nancy , 2020, Cambridge, p.96 - 106, (2020)

Gender?dependent association between exhaled nitric oxide and the CC16 38AA genotype in young school children, Nauwelaerts, S., Roosens Nancy, De Cremer Koen, Bernard Alfred, and De Keersmaecker Sigrid C. J. , Immunity, Inflammation and Disease, Jun-08-2020, (2020)

Genomic epidemiology of emerging ESBL-producing  Kentucky  in Europe., Coipan, Claudia E., Westrell Therese, van Hoeck Angela H. A. M., Alm Erik, Kotila Saara, Berbers Bas, De Keersmaecker Sigrid C. J., Ceyssens Pieter-Jan, Borg Maria Louise, Chattaway Marie, et al. , Emerg Microbes Infect, 2020 Dec, Volume 9, Issue 1, (2020)

A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium., Gand, Mathieu, Mattheus Wesley, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, Bertrand Sophie, and De Keersmaecker Sigrid C. J. , Food Microbiol, 2020 Oct, Volume 91, (2020)

Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing., Fraiture, Marie-Alice, Bogaerts Bert, Winand Raf, Deckers Marie, Papazova N., Vanneste Kevin, De Keersmaecker Sigrid C. J., and Roosens Nancy , Sci Rep, 2020 04 27, Volume 10, Issue 1, (2020)

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates., Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Piérard Denis, Marchal Kathleen, Roosens Nancy, Vanneste Kevin, and De Keersmaecker Sigrid C. J. , Sci Rep, 2020 09 04, Volume 10, Issue 1, (2020)

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates, Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Piérard Denis, Marchal Kathleen, Roosens Nancy, Vanneste Kevin, and De Keersmaecker Sigrid C. J. , Scientific Reports, Jan-12-2020, Volume 10, Issue 1, (2020)

Isolation of Drug-Resistant Gallibacterium anatis from Calves with Unresponsive Bronchopneumonia, Belgium., Van Driessche, Laura, Vanneste Kevin, Bogaerts Bert, De Keersmaecker Sigrid C. J., Roosens Nancy, Haesebrouck Freddy, De Cremer Lieze, Deprez Piet, Pardon Bart, and Boyen Filip , Emerg Infect Dis, 2020 04, Volume 26, Issue 4, (2020)

A multiplex oligonucleotide ligation-PCR method for the genoserotyping of common Salmonella using a liquid bead suspension assay, Gand, Mathieu, Mattheus Wesley, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , Food Microbiology, Jan-05-2020, Volume 87, (2020)

NGS for (Hemato-) Oncology in Belgium: Evaluation of Laboratory Performance and Feasibility of a National External Quality Assessment Program, Delcourt, Thomas, Vanneste Kevin, Soumali Mohamed Rida, Coucke Wim, Ghislain V, Hébrant Aline, Van Valckenborgh Els, De Keersmaecker Sigrid C. J., Roosens Nancy, Van de Walle P, et al. , Cancers, Jan-11-2020, Volume 12, Issue 11, (2020)

Perceived utility and feasibility of pathogen genomics for public health practice: a survey among public health professionals working in the field of infectious diseases, Belgium, 2019, Van Goethem, Nina, Struelens Marc J., De Keersmaecker Sigrid C. J., Roosens Nancy, Robert Annie, Quoilin Sophie, Van Oyen Herman, and Devleesschauwer Brecht , BMC Public Health, Jan-12-2020, Volume 20, Issue 1, (2020)

Perceived utility and feasibility of pathogen genomics for public health practice: a survey among public health professionals working in the field of infectious diseases, Belgium, 2019, Van Goethem, Nina, Struelens M. J., De Keersmaecker Sigrid C. J., Roosens Nancy, Robert A., Quoilin Sophie, Van Oyen Herman, and Devleesschauwer Brecht , BMC Public Health, Jan-12-2020, Volume 20, Issue 1, (2020)

A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine., Buytaers, Florence E., Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Vanneste Kevin, Roosens Nancy, Piérard Denis, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Microorganisms, 2020 Aug 05, Volume 8, Issue 8, (2020)

Screening strategy targeting the presence of food enzyme-producing fungi in food enzyme preparations, Deckers, Marie, Vanneste Kevin, Winand Raf, Hendrickx Marijke, Becker Pierre, De Keersmaecker Sigrid C. J., Deforce Dieter, Fraiture Marie-Alice, and Roosens Nancy , Food Control, Jan-11-2020, Volume 117, (2020)

Selection of a Noninvasive Source of Human DNA Envisaging Genotyping Assays in Epidemiological Studies: Urine or Saliva?, Nauwelaerts, S., Van Geel D., Delvoye Maud, De Cremer Koen, Bernard Alfred, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Journal of Biomolecular Techniques : JBT, Jan-04-2020, Volume 31, Issue 1, (2020)

Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study., Saltykova, Assia, Buytaers Florence E., Denayer Sarah, Verhaegen Bavo, Piérard Denis, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Int J Mol Sci, 2020 Aug 08, Volume 21, Issue 16, (2020)

Strategy for the identification of micro-organisms producing food and feed products: Bacteria producing food enzymes as study case, Deckers, Marie, Vanneste Kevin, Winand Raf, De Keersmaecker Sigrid C. J., Denayer Sarah, Heyndrickx Marc, Deforce Dieter, Fraiture Marie-Alice, and Roosens Nancy , Food Chemistry, Jan-02-2020, Volume 305, (2020)

Use of Whole Genome Sequencing Data for a First in Silico Specificity Evaluation of the RT-qPCR Assays Used for SARS-CoV-2 Detection., Gand, Mathieu, Vanneste Kevin, Thomas Isabelle, Van Gucht Steven, Capron Arnaud, Herman Philippe, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Int J Mol Sci, 2020 Aug 04, Volume 21, Issue 15, (2020)

Whole-genome sequencing of  serotype 4b isolated from ready-to-eat lentil salad in Algiers, Algeria., Drali, R, Deriet A, Verhaegen Bavo, De Keersmaecker Sigrid C. J., Botteldoorn N, Vanneste Kevin, Roosens Nancy, and Mouffok F , New Microbes New Infect, 2020 Jan, Volume 33, (2020)

Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing:  as a Proof of Concept., Saltykova, Assia, Mattheus Wesley, Bertrand Sophie, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Front Microbiol, 2019, Volume 10, (2019)

Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java., Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , Appl Microbiol Biotechnol, 2019 Jun, Volume 103, Issue 12, (2019)

Exploiting the Advantages of Molecular Tools for the Monitoring of Fungal Indoor Air Contamination: First Detection of  in Indoor Air of Air-Conditioned Offices., Libert, Xavier, Chasseur Camille, Packeu Ann, Bureau Fabrice, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Microorganisms, 2019 Dec 10, Volume 7, Issue 12, (2019)

MinION sequencing technology to characterize unauthorized GM petunia plants circulating on the European Union market, Fraiture, Marie-Alice, Ujhelyi Gabriella, Ovesna Jaroslava, Van Geel D., De Keersmaecker Sigrid C. J., Saltykova Assia, Papazova N., and Roosens Nancy , Scientific reports, Volume 9, Issue 7141, (2019)

Shifting national surveillance of Shigella infections toward geno-serotyping by the development of a tailored Luminex assay and NGS workflow., Ventola, Eleonora, Bogaerts Bert, De Keersmaecker Sigrid C. J., Vanneste Kevin, Roosens Nancy, Mattheus Wesley, and Ceyssens Pieter-Jan , Microbiologyopen, 2019 Mar 28, (2019)

SPECENZYM : A project to study the purity of food enzymes, Deckers, Marie, Vanneste Kevin, Denayer Sarah, De Keersmaecker Sigrid C. J., Heyndrickx M, De Loose M, Berben G, Debode F, Papazova N., Fox P, et al. , 2019, (2019)

Suspected Kingella Kingae outbreak in a Belgian Day-Care Center, Wyndham-Thomas, Chloé, Boreux Myriam, Schirvel Carole, Senterre Jean-Marc, De Keersmaecker Sigrid C. J., Quoilin Sophie, and Frère Julie , ESPID , (2019)

Targeting the 16S rRNA gene for bacterial identification in complex mixed samples: comparative evaluation of second (Illumina) and third (Oxford Nanopore Technologies) generation sequencing technologies., Winand, Raf, Bogaerts Bert, Hoffman Stefan, Lefèvre Loic, Delvoye Maud, Van Braekel Julien, Qiang Fu, Roosens Nancy, De Keersmaecker Sigrid C. J., and Vanneste Kevin , Int J Mol Sci, 2019 Dec 31, Volume 21, Issue 1, (2019)

Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center:  as a Proof-of-Concept., Bogaerts, Bert, Winand Raf, Qiang Fu, Van Braekel Julien, Ceyssens Pieter-Jan, Mattheus Wesley, Bertrand Sophie, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , Front Microbiol, 2019, Volume 10, (2019)

Whole-Genome Sequencing of Multidrug-Resistant Escherichia coli Strains Harboring the  Gene, Isolated from Seawater of the Algiers Coast in Algeria., Berrazeg, M, Deriet A, De Keersmaecker Sigrid C. J., Verhaegen Bavo, Vanneste Kevin, Botteldoorn N, Roosens Nancy, Mouffok F, and Drali R , Microbiol Resour Announc, 2019 Aug 22, Volume 8, Issue 34, (2019)

Whole-Genome Sequencing of Six Strains of Salmonella enterica Isolated from Imported Meat in Algeria., Deriet, A, Berrazeg M, De Keersmaecker Sigrid C. J., Botteldoorn N, Vanneste Kevin, Verhaegen Bavo, Roosens Nancy, Mouffok F, and Drali R , Microbiol Resour Announc, 2019 Aug 29, Volume 8, Issue 35, (2019)

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:., Saltykova, Assia, Wuyts Véronique, Mattheus Wesley, Bertrand Sophie, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , PLoS One, 2018, Volume 13, Issue 2, (2018)

Detection and discrimination of five E. coli pathotypes using a combinatory SYBR® Green qPCR screening system, Barbau-Piednoir, Elodie, Denayer Sarah, Botteldoorn N, Dierick Katelijne, De Keersmaecker Sigrid C. J., and Roosens Nancy , Applied Microbiology and Biotechnology, Jan-04-2018, Volume 102, Issue 7, Number 3285, (2018)

Development of a bioinformatics pipeline for the routine analysis of Influenza whole genome sequencing data, Fu, Qiang, Winand Raf, Van Braekel Julien, Barbezange Cyril, Hutse Veronik, Thomas Isabelle, Van Gucht Steven, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , European Conference on Computational Biology 2018 conference (http://eccb18.org/). 8 ? 12 September, 2018, Athens, Greece, (2018)

The genetic structure of the Belgian population, Van den Eynden, Jimmy, Descamps Tine, Delporte Els, Roosens Nancy, De Keersmaecker Sigrid C. J., De Wit Vanessa, Vermeesch Joris Robert, Goetghebeur Els, Tafforeau Jean, Demarest Stefaan, et al. , Human Genomics, Jan-12-2018, Volume 12, Issue 1, (2018)

High-resolution melting PCR analysis for rapid genotyping of Burkholderia mallei., Girault, G, Wattiau P, Saqib M, Martin B, Vorimore F, Singha H, Engelsma M, Roest H J., Spicic S, Grunow R, et al. , Infect Genet Evol, 2018 09, Volume 63, (2018)

Monitoring of influenza: Whole-Genome Sequencing to provide insights in the disease severity, Van Poelvoorde, Laura, De Keersmaecker Sigrid C. J., Vanneste Kevin, Van Gucht Steven, Thomas Isabelle, Saelens Xavier, Barbezange Cyril, and Roosens Nancy , The 6th International Influenza Meeting, 2-4 September 2018 Münster, Germany, (2018)

A multiplex oligonucleotide ligation-PCR method using the Luminex technology for the geno-serotyping of the most common Salmonella in Belgium, Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , ECCMID, 2018, Madrid, Spain, (2018)

Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO., Fraiture, Marie-Alice, Saltykova Assia, De Keersmaecker Sigrid C. J., and Roosens Nancy , Sci Rep, 2018 May 21, Volume 8, Issue 1, (2018)

A novel genotoxin-specific qPCR array based on the metabolically competent human HepaRG? cell line as a rapid and reliable tool for improved in vitro hazard assessment, Ates, Gamze, Mertens Birgit, Heymans Anja, Verschaeve Luc, Milushev Dimiter, Vanparys Philippe, Roosens Nancy, De Keersmaecker Sigrid C. J., Rogiers Vera, and Doktorova Tatyana Y. , Archives of Toxicology, Jun-02-2018, (2018)

Detection of Plasmid-Mediated Colistin Resistance, mcr-1 and mcr-2 Genes, in Salmonella spp. Isolated from Food at Retail in Belgium from 2012 to 2015., Garcia-Graells, Cristina, De Keersmaecker Sigrid C. J., Nguyen Quang Trung, Anthonissen R., Aerts Raf, Roosens Nancy, Dierick Katelijne, and Botteldoorn N , Foodborne Pathog Dis, 28/11/2017, (2017)

Development and performance assessment of a luminex xMAP® direct hybridization assay for the detection and identification of indoor air fungal contamination., Libert, Xavier, Packeu Ann, Bureau Fabrice, Roosens Nancy, and De Keersmaecker Sigrid C. J. , PLoS One, 2017, Volume 12, Issue 3, p.e0173390, (2017)

Development of a real-time PCR test for the geno-serotyping of Salmonella Paratyphi B and its variant Java, Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , BSFM conference, 2017, Brussels, Belgium, (2017)

Discrimination of three genetically close Aspergillus species by using high resolution melting analysis applied to indoor air as case study., Libert, Xavier, Packeu Ann, Bureau Fabrice, Roosens Nancy, and De Keersmaecker Sigrid C. J. , BMC Microbiol, 2017 Apr 04, Volume 17, Issue 1, p.84, (2017)

Evaluation of SNPs based on DNA extracted from urine as part of the development and use of a kit of non-invasive biomarkers to monitor respiratory health of young children, Nauwelaerts, S., De Cremer Koen, Bernard Alfred, Roosens Nancy, and De Keersmaecker Sigrid C. J. , qPCR dPCR & NGS 2017 Symposium, 03/04/2017, Freising, Germany , (2017)

Great diversity in Mcr-1 encoding plasmids among human E. coli and Salmonella spp. isolates in Belgium , Ceyssens, Pieter-Jan, Bogaerts Pierre, De Keersmaecker Sigrid C. J., Bertrand Sophie, and Glupzynski Youri , ECCMID 2017, 17/05/2017, Volume 1, Issue ESCMID, Vienna, Austria, (2017)

Molecular Subtyping of Salmonella Typhimurium with Multiplex Oligonucleotide Ligation-PCR (MOL-PCR)., Wuyts, Véronique, Mattheus Wesley, Roosens Nancy, Marchal Kathleen, Bertrand Sophie, and De Keersmaecker Sigrid C. J. , Methods Mol Biol, 2017, Volume 1616, p.39-69, (2017)

Salmonella infections: identification techniques for successful investigations, Bertrand, Sophie, Mattheus Wesley, Ceyssens Pieter-Jan, Gand Mathieu, Vanhoof Raymond, Botteldoorn N, Denayer Sarah, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Labinfo, 2017, Volume 16, Number 47, Belgium, (2017)

The added value of whole genome sequencing for the development of a specific detection method for an EU-unauthorized genetically modified Bacillus subtilis overproducing riboflavin, De Keersmaecker, Sigrid C. J., Barbau-Piednoir E., Delvoye M., Gau C., Philipp P., and Roosens Nancy , Technical Meeting on the impact of Whole Genome Sequencing (WGS) on food safety management: within a one health framework, 0/0/2016, Issue FAO/GMI, NA, (2016)

The Belgian NGS guidelines for (haemato)-oncology: 2016- version 01, Hébrant, Aline, Froyen G., Maes B., Salgado R., Le Mercier M., D'Haene N., De Keersmaecker Sigrid C. J., Claes K., Van der Meulen J., Aftimos P., et al. , BSMO J, 0/0/2016, Volume /, (2016)

Data analysis associated with the use of whole genome sequencing for subtyping of pathogenic microorganisms, Salmonella Typhimurium as a case study, Saltykova, Assia, Wuyts V., Bertrand Sophie, Roosens Nancy, Marchal K., and De Keersmaecker Sigrid C. J. , Applied Bioinformatics in Life Sciences, 17/3/2016, Issue VIB, NA, (2016)

Development and implementation of a transversal NGS & bioinformatics platform at the Belgian Institute of Public Health, Vanneste, Kevin, Bogaerts Bert, Fu Q., Winand Raf, Romeu A.G., Brown I., De Keersmaecker Sigrid C. J., and Roosens Nancy , Applied Bioinformatics in Life Sciences, 17/3/2016, Issue VIB, NA, (2016)

Development and implementation of a transversal NGS & bioinformatics platform at the Belgian Institute of Public Health: deployment of user-friendly pipelines for routine use, Vanneste, Kevin, Fu Q., Bogaerts Bert, Winand Raf, Romeu A.G., Brown I., Van Braekel Julien, De Keersmaecker Sigrid C. J., and Roosens Nancy , 15th European Conference on Computational Biology, 0/0/2016, Issue VU Amsterdam,  TU Delft,  DTL,  BioSB,  UMC Utrecht, NA, (2016)

Development and use of non-invasive biomarkers to monitor respiratory health of young children, Nauwelaerts, S., De Cremer Koen, Denis Olivier J., Bernard A., De Keersmaecker Sigrid C. J., and Roosens Nancy , Institute Pasteur International Network Scientific Symposium, 1/7/2016, Issue Institut Pasteur, Paris, France, (2016)

Development of a Luminex xTAG® assay for cost-effective multiplex detection of ?-lactamases in Gram-negative bacteria., Ceyssens, Pieter-Jan, Garcia-Graells Cristina, Fux Frédéric, Botteldoorn N, Mattheus Wesley, Wuyts Véronique, De Keersmaecker Sigrid C. J., Dierick Katelijne, and Bertrand Sophie , J Antimicrob Chemother, 2016 Sep, Volume 71, Issue 9, p.2479-83, (2016)

Development of a molecular alternative to classical microbiological subtyping methods, Salmonella phage typing as a case study, Wuyts, V., Bertrand Sophie, Marchal K., Roosens Nancy, and De Keersmaecker Sigrid C. J. , 30/6/2016, Number 100, Brussels, Belgium, p.96 - 100, (2016)

Development of xMAP and xTAG Luminex assays for public health surveillance, De Keersmaecker, Sigrid C. J. , xMAP® CONNECT 2016 - Sharing Multiplex Solutions, 0/0/2016, Issue Luminex Coorporation, NA, (2016)

FabR regulates Salmonella biofilm formation via its direct target FabB., Hermans, Kim, Roberfroid Stefanie, Thijs Inge M., Kint Gwendoline, De Coster David, Marchal Kathleen, Vanderleyden Jos, De Keersmaecker Sigrid C. J., and Steenackers Hans P. , BMC Genomics, 2016 Mar 22, Volume 17, p.253, (2016)

Genetic relatedness and virulence profile of Shiga toxin-producing Escherichia coli isolated from food in Belgium, Verhaegen, Bavo, Barbau-Piednoir E., De Zutter L., Van Damme Inge, Denayer Sarah, De Keersmaecker Sigrid C. J., and Heyndrickx M. , Twenty-first Conference on Food Microbiology, 0/0/2016, Issue BSFM, NA, (2016)

Goal 4: Develop and implement new technologies and methods to improve WIV-ISP's responsiveness to public health threats, Sneyers, Myriam, Roosens Nancy, and De Keersmaecker Sigrid C. J. , 30/6/2016, Number 19, Brussels, Belgium, p.114, (2016)

Guest lecture molecular- microbial techniques: the use of whole genome sequencing (WGS) for typing of bacterial pathogenic isolates, De Keersmaecker, Sigrid C. J. , Course Bio-engineers - Molecular-Microbial techniques - Prof. M. Uyttendaele, 29/11/2016, Issue UGent, NA, (2016)

A molecular approach for the rapid, selective and sensitive detection of Exophiala jeanselmei in environmental samples: development and performance assessment of a real-time PCR assay, Libert, X, Chasseur Camille, Packeu Ann, Bureau F, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Appl Microbiol Biotechnol, 2016 Feb, Volume 100, Issue 3, Number 1392, p.1377-92, (2016)

Molecular subtyping of  Salmonella  Typhimurium with multiplex oligonucleotide ligation-PCR (MOL-PCR), Wuyts, V., Mattheus Wesley, Roosens Nancy, Marchal K., Bertrand Sophie, and De Keersmaecker Sigrid C. J. , Diagnostic Bacteriology Protocols, 0/0/2016, Number -, Totowa, New Jersey, p.-, (2016)

Optimized MOL-PCR for Characterization of Microbial Pathogens, Wuyts, Véronique, Roosens Nancy, Bertrand Sophie, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Curr Protoc Cytom, 2016 Jan 06, Volume 75, Number 13.15.15, p.13.15.1-13.15.15, (2016)

Statistical framework for detection of Genetically Modified Organisms based on Next Generation Sequencing, Willems, Sander, Fraiture Marie-Alice, Deforce Dieter, De Keersmaecker Sigrid C. J., Herman Philippe, De Loose Marc, Ruttink Tom, Van Nieuwerburgh Filip, and Roosens Nancy , Food Chemistry, 21/07/2015, Volume 192, Issue 1, Number 798, (2016)

The use of whole genome sequencing (WGS) for typing of bacterial pathogenic isolates, De Keersmaecker, Sigrid C. J. , 21st Conference on Food Microbiology, 0/0/2016, Issue BSFM, NA, (2016)

Whole genome sequencing to help enforcement laboratories for the development of detection method for an EU-unauthorized genetically modified Bacillus subtilis overproducing riboflavin, De Keersmaecker, Sigrid C. J., Papazova N., and Roosens Nancy , LabInfo, 16/7/2016, Volume 15, Issue Jul-16, Number 31, p.29 - 31, (2016)

Arbo-VIRTUESS: Evaluation of the use of non-invasive tests for early screening and survey of arboviruses, Broeders, Sylvia, De Keersmaecker Sigrid C. J., Suin Vanessa, Van Gucht Steven, Pol M., Gourinat A.C., Biron A., Dupont-Rouzeyrol M., Vanhomwegen J., Manuguerra J.C., et al. , International Scientific Symposium, 14/10/2015, Issue Institut Pasteur International Network, NA, (2015)

Development and performance assessment of a qualitative SYBR® green real-time PCR assay for the detection of Aspergillus versicolor in indoor air., Libert, X, Chasseur Camille, Bladt S, Packeu Ann, Bureau F, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Appl Microbiol Biotechnol, 2015 Sep, Volume 99, Issue 17, p.7267-82, (2015)

Erratum to: Development and performance assessment of a qualitative SYBR® green real-time PCR assay for the detection of Aspergillus versicolor in indoor air., Libert, X, Chasseur Camille, Bladt S, Packeu Ann, Bureau F, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Appl Microbiol Biotechnol, 2015 Oct, Volume 99, Issue 19, p.8319-20, (2015)

Evaluation of a DNA extraction kit for the use of saliva as a non-invasive source of human DNA biomarkers in support of public health genomics., Ballot, C, De Wit V, Roosens Nancy, and De Keersmaecker Sigrid C. J. , 0/0/2015, Number 17, Brussels, Belgium, p.17, (2015)

Evaluation of whole genome sequencing for routine subtyping of  Salmonella  Typhimurium for surveillance and outbreak investigation, Wuyts, V., Bertrand Sophie, Mattheus Wesley, Roosens Nancy, Marchal K., and De Keersmaecker Sigrid C. J. , Revolutionizing Next-Generation Sequencing: Tools and Technologies, 15/1/2015, Issue VIB, NA, (2015)

Experimental approaches to identify small RNAs and their diverse roles in bacteria - what we have learnt in one decade of MicA research5238, Van Puyvelde, S., Vanderleyden J., and De Keersmaecker Sigrid C. J. , MicrobiologyOpen, 0/10/2015, Volume 4, Issue 5, Number 711, p.699 - 711, (2015)

Genome Sequence of EU-Unauthorized Genetically Modified Bacillus subtilis Strain 2014-3557 Overproducing Riboflavin, Isolated from a Vitamin B2 80% Feed Additive., Barbau-Piednoir, Elodie, De Keersmaecker Sigrid C. J., Wuyts Véronique, Gau Céline, Pirovano Walter, Costessi Adalberto, Philipp Patrick, and Roosens Nancy , Genome Announc, 2015 Apr 09, Volume 3, Issue 2, (2015)

Guidelines for optimisation of a multiplex oligonucleotide ligation-PCR for characterisation of microbial pathogens in a microsphere suspension array., Wuyts, Véronique, Roosens Nancy, Bertrand Sophie, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Biomed Res Int, 2015, Volume 2015, p.790170, (2015)

A multiplex oligonucleotide ligation-PCR as a complementary tool for subtyping of Salmonella Typhimurium, Wuyts, V., Mattheus Wesley, Roosens Nancy, Marchal K., Bertrand Sophie, and De Keersmaecker Sigrid C. J. , Appl Microbiol Biotechnol, 0/10/2015, Volume 99, Issue 19, Number 8149, p.8137 - 8149, (2015)

Next Generation Sequencing to identify GMO in food and feed products, Willems, Sander, Fraiture Marie-Alice, De Keersmaecker Sigrid C. J., and Roosens Nancy , LabInfo, 2015, Belgium, (2015)

Next-generation sequencing as a tool for the molecular characterisation and risk assessment of genetically modified plants: Added value or not?, Pauwels, Katia, De Keersmaecker Sigrid C. J., De Schrijver Adinda, du Jardin P., Roosens Nancy, and Herman Philippe , Trends Food Sci. Technol., Volume 45, Issue 2, p.319 - 326, (2015)

Platform NGS & bioinformatica @ WIV-ISP, De Keersmaecker, Sigrid C. J. , RIVM - Bioinformatics, 20/1/2015, Issue RIVM, NA, (2015)

Use of next generation sequencing data to develop a qPCR method for specific detection of EU-unauthorized genetically modified Bacillus subtilis overproducing riboflavin., Barbau-Piednoir, Elodie, De Keersmaecker Sigrid C. J., Delvoye Maud, Gau Céline, Philipp Patrick, and Roosens Nancy , BMC Biotechnol, 2015 Nov 11, Volume 15, p.103, (2015)

The usefulness of whole genome sequencing for outbreak investigation of food pathogens, Salmonella Enteritidis as a case study, Wuyts, V., Denayer Sarah, Roosens Nancy, Mattheus Wesley, Bertrand Sophie, Marchal K., Dierick Katelijne, and De Keersmaecker Sigrid C. J. , LabInfo, 0/0/2015, Volume submitted, (2015)

User-friendly WGS analysis of Salmonella Enteritidis PT4 outbreaks, Wuyts, V., Denayer Sarah, Roosens Nancy, Mattheus Wesley, Bertrand Sophie, Marchal K., Dierick Katelijne, and De Keersmaecker Sigrid C. J. , 2015/10/08/, (2015)

Whole Genome Sequence Analysis of Salmonella Enteritidis PT4 Outbreaks from a National Reference Laboratory's Viewpoint., Wuyts, Véronique, Denayer Sarah, Roosens Nancy, Mattheus Wesley, Bertrand Sophie, Marchal Kathleen, Dierick Katelijne, and De Keersmaecker Sigrid C. J. , PLoS Curr, 2015 Sep 11, Volume 7, (2015)

Benefits of genomics in the risk assessment of genetically modified plants for human consumption, Willems, S., De Keersmaecker Sigrid C. J., Herman Philippe, and Roosens Nancy , 2nd Plant Genomics Congress Europe, 0/5/2014, Issue Global Engage, (2014)

Comparative study of seven commercial kits for human DNA extraction from urine samples suitable for DNA biomarker-based public health studies., Bali, Latifa El, Diman Aurélie, Bernard Alfred, Roosens Nancy, and De Keersmaecker Sigrid C. J. , J Biomol Tech, 2014 Dec, Volume 25, Issue 4, p.96-110, (2014)

Development of a Luminex®-based molecular alternative for classical microbiological subtyping techniques, Salmonella phage typing as a case study, Wuyts, V., Bertrand Sophie, Roosens Nancy, Marchal K., and De Keersmaecker Sigrid C. J. , 0/0/2014, Brussels, Belgium, (2014)

Development of a multiplex liquid bead array-based detection system for genetic characterization of pathogenic  E. coli 4869, Barbau-Piednoir, E., Botteldoorn N, Dierckx D., Roosens Nancy, and De Keersmaecker Sigrid C. J. , Nineteenth Conference on Food Microbiology, 0/0/2014, Issue =Belgian Society for Food Microbiology vzw/aslb (BSFM), NA, (2014)

Evaluation and implementation of molecular tools to use epigenetic biomarkers present in urine for public health research, Balzarini, S., Diman A., Roosens Nancy, and De Keersmaecker Sigrid C. J. , European Summer School on Nutrigenomic, 0/0/2014, Volume 15, Issue Gabbianell,R.,  Martínez,A.J.,  De Caterina,R., Number 93, p.75 - 93, (2014)

Evaluation of the diversity of indoor airborne molds to assess their impact on public health, Libert, X., Bladt S., Bureau F., Chasseur Camille, Packeu Ann, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Applications of Next Generation Sequencing for public health, 0/0/2014, Issue =WIV-ISP, NA, (2014)

Evaluation of urine as source of DNA biomarkers for studies supporting a pro-active public health policy, L. Bali, El, Bernard A., Roosens Nancy, and De Keersmaecker Sigrid C. J. , 2nd Austrian Biomarker Symposium 2014: Early Diagnostics, 0/0/2014, Issue Austrian Institute of Technology (AIT), NA, (2014)

Evaluation of whole genome sequencing for routine subtyping of  Salmonella  Typhimurium for surveillance and outbreak investigation, Wuyts, V., Bertrand Sophie, Mattheus Wesley, Roosens Nancy, Marchal K., and De Keersmaecker Sigrid C. J. , Applications of Next Generation Sequencing for public health, 10/10/2014, Issue WIV-ISP, (2014)

Genome sequence of the  Salmonella enterica  subsp.  enterica  serovar Namur strain 05-2929, lacking the  Salmonella  atypical fimbrial operon.5090, Barbau-Piednoir, E., Bertrand N., Roosens Nancy, and De Keersmaecker Sigrid C. J. , Applications of Next Generation Sequencing for public health, 0/0/2014, Issue =WIV-ISP, NA, (2014)

Genome Sequence of the Salmonella enterica subsp. enterica Serovar Namur Strain 05-2929, Lacking the Salmonella Atypical Fimbrial Operon., Barbau-Piednoir, Elodie, Bertrand Sophie, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Genome Announc, 2014 Apr 10, Volume 2, Issue 2, (2014)

La méthylation de l'ADN dans l'urine: Evaluation d'un procédé de conversion au bisulfite de sodium de l'ADN provenant de l'urine, en vue d'en mesurer son état de méthylation, Phillipot, S., Diman A., Roosens Nancy, and De Keersmaecker Sigrid C. J. , 0/0/2014, Number 29, Brussels, Belgium, p.29, (2014)

A new type of multiplex assay to screen for GMO in food and feed samples developed within the ORIENT-EXPRESS project4851, Broeders, Sylvia, De Keersmaecker Sigrid C. J., and Roosens Nancy , LabInfo, 0/2/2014, Volume 11, Number 14, p.12 - 14, (2014)

NeXSplorer.iph: Development of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety, De Keersmaecker, Sigrid C. J., Bertrand Sophie, Mattheus Wesley, Herman Philippe, Dierick Katelijne, Botteldoorn N, Denayer Sarah, Van Gucht Steven, Thomas Isabelle, Deforce D., et al. , Applications of Next Generation Sequencing for public health, 0/0/2014, Issue =WIV-ISP, NA, (2014)

NGS@WIV-ISP, De Keersmaecker, Sigrid C. J. , Applications of Next Generation Sequencing for public health, 0/0/2014, Issue WIV-ISP, NA, (2014)

ORIENT-EXPRESS in times of crisis, Broeders, Sylvia, De Keersmaecker Sigrid C. J., Van Gucht Steven, Thomas Isabelle, Suin Vanessa, Dierick Katelijne, Botteldoorn N, Van Borm Steven, and Roosens Nancy , Applications of Next Generation Sequencing for public health, 0/0/2014, Issue WIV-ISP, NA, (2014)

Round table: NGS & Bioinformatics/orientation lab/Platform molecular Biology, De Keersmaecker, Sigrid C. J. , Visit of WIV-ISP delegation to RIVM, 0/0/2014, Issue RIVM, NA, (2014)

Development of a HRM-based detection method for DNA biomarkers in support of public health, De Keersmaecker, Sigrid C. J., Delvoye M., Ahdach O., L. Bali El, and Roosens Nancy , qPCR & NGS 2013 Event: Next Generation Thinking in Molecular Diagnostics, 0/0/2013, Issue Pfaffl,S.,  Pfaffl,M., Number 41, Technical University Munich, p.40 - 41, (2013)

Development of a molecular subtyping method for  Salmonella  Typhimurium combining different types of markers in a Luminex xTAG assay, Wuyts, V., Bertrand Sophie, Roosens Nancy, Marchal K., and De Keersmaecker Sigrid C. J. , xSAMPLES Benelux 2013, 19/6/2013, Issue Luminex, (2013)

DNA from urine as source for biomarkers in public health, L. Bali, El, Bernard A., Roosens Nancy, and De Keersmaecker Sigrid C. J. , Biomarker discovery:Driving technologies, 28/2/2013, Issue =Euroscicon, NA, (2013)

The Luminex technology and its application in the SalMolType project to replace Salmonella phage typing, Wuyts, V., and De Keersmaecker Sigrid C. J. , Tuesday seminar, 0/0/2013, Issue WIV-ISP, NA, (2013)

MLVA as a tool for public health surveillance of human Salmonella Typhimurium: prospective study in Belgium and evaluation of MLVA loci stability., Wuyts, Véronique, Mattheus Wesley, De Laminne de Bex Guillaume, Wildemauwe Christa, Roosens Nancy, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , PLoS One, 2013, Volume 8, Issue 12, p.e84055, (2013)

Molecular subtyping of  Salmonella  Typhimurium combining different types of markers in a multiplex liquid bead suspension array, Wuyts, V., Bertrand Sophie, Roosens Nancy, Marchal K., and De Keersmaecker Sigrid C. J. , I3S: International Symposium  Salmonella  and Salmonellosis 2013, 27/5/2013, Issue ANSES,InVS,INRA,Institut Pasteur,ISPAIA and ZOOPOLE, NA, (2013)

A new type of multiplex assay to screen for GMO in food and feed samples developed within the ORIENT-EXPRESS project, Broeders, Sylvia, De Keersmaecker Sigrid C. J., and Roosens Nancy , LabInfo, 0/1/2013, Volume 11, Number 14, p.12 - 14, (2013)

Comparative study of five commercial kits for DNA extraction from urine samples., L. Bali, El, Roosens Nancy, and De Keersmaecker Sigrid C. J. , 0/0/2012, Brussels, p.15, (2012)

Design of multiplex assays for molecular subtyping of pathogens with the Luminex xMAP technology, Wuyts, V., Roosens Nancy, Bertrand Sophie, Marchal K., and De Keersmaecker Sigrid C. J. , Posttranscriptional regulation and epigenetics in microorganisms, 30/11/2012, Issue Belgian Society for Microbiology, NA, (2012)

Emerging threats: new GMO and UGM419, Broeders, Sylvia, De Keersmaecker Sigrid C. J., and Roosens Nancy , LabInfo, 0/7/2012, Volume 8, Number 22, p.18 - 22, (2012)

How to Deal with the Upcoming Challenges in GMO Detection in Food and Feed424, Broeders, Sylvia, De Keersmaecker Sigrid C. J., and Roosens Nancy , Journal of Biomedicine and Biotechnology, 0/0/2012, Volume 2012, (2012)

The Luminex technology and its application in the SalMolType project to replace  Salmonella  phage typing, Wuyts, V., and De Keersmaecker Sigrid C. J. , Tuesday seminar, 6/11/2012, Issue WIV-ISP,PBB, NA, (2012)

Operatie DNA: Achter de schermen van het BIOTECHlab, De Keersmaecker, Sigrid C. J. , 22/11/2012, (2012)

Overview of Methods for DNA and RNA extraction from urine samples, L. Bali, El, Roosens Nancy, and De Keersmaecker Sigrid C. J. , 15/12/2012, Brussels, Belgium, p.15, (2012)

Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products, D'aes, Jolien, Fraiture Marie-Alice, Bogaerts Bert, Van Laere Yari, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , (0)

Wastewater-based epidemiological surveillance - Yearly report - 2024, Maloux, Hadrien, Janssens Raphael, Lesenfants Marie, Meyers Anke, Hansford Kimberley, Cornelissen Laura, Van Poelvoorde Laura, Gobbo Andrea, Fraiture Marie-Alice, De Keersmaecker Sigrid C. J., et al. , 2025, Brussels, Belgium, p.34, (0)