Résultats de la recherche - 16 results
Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products
feasibility of a metagenomic shotgun sequencing approach to investigate microbial contamination in fermentation products, focusing on source tracing of GMM strains using innovative strain deconvolution and ...
An interlaboratory proficiency test using metagenomic sequencing as a diagnostic tool for the detection of RNA viruses in swine fecal material.
Biology Feces Genome, Viral High-Throughput Nucleotide Sequencing Laboratory Proficiency Testing Metagenome Metagenomics RNA Viruses RNA, Viral Swine Swine Diseases Abstract: UNLABELLED: Metagenomic shotgun ...
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities
Scientific Data, Volume 11, Issue 1 (2024) ISBN: 2052-4463 Abstract: Taxonomic classification is crucial in identifying organisms within diverse microbial communities when using metagenomics shotgun ...
Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes
Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Navickaite, Indre; Bartsch, Lee-Julia; Grützke, Josephine; Overballe-Petersen, Søren; Rasmussen, Astrid; Otani, Saria; Michelacci, Valeria; Matamoros, Bosco Rodríguez; González-Zorn ...
Strain-level characterization without culture enrichment? Easing and accelerating outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling
Keersmaecker Source: BSFM, BSFM, Brussels, Belgium (2023) Keywords: adaptive sampling nanopore outbreak investigation shotgun metagenomics Abstract: Introduction Traditionally, the investigation of suspect food ...
Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety
Safety microbiological contaminants shotgun metagenomics Abstract: Foodborne contaminations are a global burden on public health worldwide. For many years, and until recently, the microbial contaminants ...
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteriaAbstractBackgroundResultsConclusion
Keywords: DNA extraction HMW DNA Long-read Metagenomics Method evaluation nanopore Abstract: Background: Oxford Nanopore Technologies (ONT) offers an accessible platform for long-read sequencing, which ...
Metagenomic Characterization of Multiple Genetically Modified Bacillus Contaminations in Commercial Microbial Fermentation Products
12, Issue 12 (2022) Keywords: Bacillus food enzyme genetically modified microorganisms (GMM) hybrid genome assembly metagenomic shotgun sequencing Abstract: Genetically modified microorganisms (GMM) are ...
Shotgun metagenomics for strain-level food-borne outbreak investigation
Publication Type: Scientific poster, presentation or proceeding Authors: Florence E Buytaers Source: FoodMicro (2022) Service: Activités transversales en génomique appliquée Transversale activiteiten in toegepaste genomica Transversal activities in appli ...
A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products
Publication Type: Scientific poster, presentation or proceeding Authors: Florence E Buytaers; Marie-Alice Fraiture; Bas Berbers; Els Vandermassen; Stefan Hoffman; N. Papazova; Kevin Vanneste; Kathleen Marchal; Nancy Roosens; Sigrid C.J. De Keersmaecker So ...