Résultats de la recherche - 46 results
Advancing automated identification of airborne fungal spores: guidelines for cultivation and reference dataset creationAbstract
Silas; Bendinelli, Tommaso; D’hooge, Elizabet; Sikoparija, Branko Source: Aerobiologia, Volume 41, Issue 2 (2025) Keywords: Airflow cytometry Automatic identification Culture collection fungal spores ...
Advancing automated identification of airborne fungal spores: Guidelines for cultivation and reference dataset creation
B Sikoparija Source: Aerobiologia, Volume 41, Number 525 (2025) Keywords: Airflow cytometry Automatic identification Culture collection fungal spores Machine Learning Abstract: Airborne bioparticles, including ...
The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
collections Cyanobacteria Genomics Gloeobacterales Metagenomics nextflow phylogenomics Phylogeny Singularity containers Workflow Abstract: Background: Microbial culture collections play a key role in taxonomy ...
Antigenic changes in influenza A(H3N2) driven by genetic evolution: Insights from virological surveillance, EU/EEA, week 40/2023 to week 9/2024
circulating influenza viruses by (sub)type, genetic clade, antigenic group and antiviral susceptibility in that season in the EU / EEA. Methods We collected surveillance data from EU / EEA countries through ...
Identification of Mycobacterium abscessus Subspecies by MALDI-TOF Mass Spectrometry and Machine Learning.
level. Moreover, an improved model with Spanish isolates was able to identify 88.9% of strains collected in other countries. In addition, differences in culture media, colony morphology, and geographic ...
Investigations upon the Improvement of Dermatophyte Identification Using an Online Mass Spectrometry Application.
by adding new reference spectra to the MSI-2 application. Nine libraries were set up, comprising an increasing number of spectra obtained from reference strains that were submitted to various culture ...
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
Keersmaecker Source: Int J Mol Sci, Volume 21, Issue 16 (2020) Keywords: foodborne outbreak investigation public health strain-level metagenomics Abstract: Culture-independent diagnostics, such as metagenomic ...
Exploiting the Advantages of Molecular Tools for the Monitoring of Fungal Indoor Air Contamination: First Detection of in Indoor Air of Air-Conditioned Offices.
of in indoor air collected from offices in contact with contaminated air-conditioning reservoirs. While its presence in indoor air could not be demonstrated with culture-based methods, it was found by ...
Public microbial resources centres: key hubs for FAIR microorganisms and genetic materials.
DNA libraries) to support new discoveries and follow-on studies. These culture collections play a central role in the conservation of microbial biodiversity and have expertise in cultivation, ...
Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe.
set of 5845 Illumina sequences. To give estimates of error rates, we use a prospectively collected dataset of 4362. Using culture based DST as the reference, we estimate to be 100%, 95%, 82%, 99% ...