be.Prepared: Setting up a cloud-based bioinformatics platform and coupled NRC usability platform for integrated genomic-epidemiological analysis at a national level, Gori, A., Kelchtermans Michael, Millis Kato, Van Laer Amber, Mairiaux Eric, initiative Members of the H. E. R., Van den Bossche An, Ceyssens Pieter-Jan, Mattheus Wesley, Mathys Vanessa, et al. , Applied Bioinformatics and Public Health Microbiology, 22/05/2025, Hixton, UK, (2025)

Oxford Nanopore Technologies R10 sequencing enables accurate cgMLST-based bacterial outbreak investigation of Neisseria meningitidis and Salmonella enterica when accounting for methylation-related errors, Bert, Bogaerts, Maex Margo, Commans Florian, Nathalie Goeders, Van den Bossche An, J. De Keersmaeck, C. Roosens, Nancy H., Ceyssens Pieter-Jan, Mattheus Wesley, and Kevin Vanneste , Journal of Clinical Microbiology, Oct-08-2026, (2025)

Salmonella spp. as a be.Prepared Case Study for Integrating Microbial Genomic and Health Data in Public Health Surveillance, Van Laer, Amber, Commans Florian, Mattheus Wesley, Van den Bossche An, Ceyssens Pieter-Jan, Vanneste Kevin, De Keersmaecker Sigrid C. J., Gori A., Kelchtermans Michael, Milis Kato, et al. , Scientific seminar for Infectious Diseases, 22/05/2025, Brussels, Belgium, (2025)

Speeding up drug susceptibility testing in Mycobacterium tuberculosis using RNA biomarkers, Sury*, Amandine, Maex Margo, Baulard Alain, Bhattacharyya Roby P., Depickère Stéphanie, Hung Deborah T., Paul Cos, Fadel Sayes, Wafa Frigui, Roland Brosch, et al. , eBioMedicine, Jan-03-2025, Volume 113, (2025)

The ambitious plan to integrate genomics and patient data in the surveillance of infectious disease and AMR in Belgium: Experiences from be.Prepared, Ceyssens, Pieter-Jan, Van Laer Amber, Masset Heleen, and initiative Members of the H. E. R. , Antimicrobial Resistance - Genomes, Big Data and Emerging Technologies, 13/03/2024, Hixton, UK, (2024)

Multicenter comparison of Etest, Vitek2 and BD Phoenix to broth microdilution for beta-lactam susceptibility testing of Streptococcus pneumonia., Martens, Steven, Cuypers Lize, Bélik Florian, Briers Pieter-Jan, Ceyssens Pieter-Jan, Denis Olivier, Huang Te-Din, Magerman Koen, Strypens Thomas, Van den Abeele Anne-Marie, et al. , Eur J Clin Microbiol Infect Dis, 2024 Jul, Volume 43, Issue 7, (2024)

Non-invasive Streptococcus pneumoniae infections are associated with different serotypes than invasive infections, Belgium, 2020 to 2023, Passaris, I, Depickère Stéphanie, Braeye Toon, Mukovnikova Marina, Vodolazkaia Alexandra, Abels Chloé, Cuypers Lize, Desmet Stefanie, Ceyssens Pieter-Jan, and NIPD study group Belgium ,  Euro Surveill, Volume 29, Issue 45, (2024)

A One-Health approach to monitoring antimicrobial consumption in Belgium 2012-2021, Kelly, Moira, Damian Elena, Bonacini Laura, Dewulf Joroen, Vanderhaeghen Wannes, Dal Pozzo Fabiana, Catry Boudewijn, Catteau Lucy, and Ceyssens Pieter-Jan , ECCMID Global, April 2024, Barcelona, Spain, (2024)

Personalized bacteriophage therapy outcomes for 100 consecutive cases: a multicentre, multinational, retrospective observational study., Pirnay, Jean-Paul, Djebara Sarah, Steurs Griet, Griselain Johann, Cochez Christel, De Soir Steven, Glonti Tea, Spiessens An, Vanden Berghe Emily, Green Sabrina, et al. , Nat Microbiol, 2024 Jun, Volume 9, Issue 6, (2024)

Possible impact of culture-independent diagnostic techniques on surveillance of gastrointestinal pathogens in Belgium, de Muylder, Géraldine, Van Dyck Wouter, Ceyssens Pieter-Jan, Mattheus Wesley, Crombé Florence, Piérard Denis, Martiny Delphine, Vandenberg Olivier, Vernelen Kris, China Bernard, et al. , ESCAIDE 2024, 2024, Stockholm, Sweden, (2024)

QC as a basis for human application of phage therapy in Belgium, Willocx, Marie, Lavigne Rob, Ceyssens Pieter-Jan, and Vanhee Celine , 34th International Symposium on Pharmaceutical and Biomedical Analysis , 10/09/2024, Geneva, Switzerland, (2024)

Strategy to develop and validate digital droplet PCR methods for global antimicrobial resistance wastewater surveillance, Gobbo, Andrea, Fraiture Marie-Alice, Van Poelvoorde Laura, De Keersmaecker Sigrid C. J., Garcia-Graells Cristina, Van Hoorde Koenraad, Verhaegen Bavo, Huwaert Astrid, Maloux Hadrien, Hutse Veronik, et al. , Water Environment Research, Jan-11-2024, Volume 96, Issue 11, (2024)

Author Correction: The evolution and international spread of extensively drug resistant Shigella sonnei, Mason, Lewis C. E., Greig David R., Cowley Lauren A., Partridge Sally R., Martinez Elena, Blackwell Grace A., Chong Charlotte E., De Silva P. Malaka, Bengtsson Rebecca J., Draper Jenny L., et al. , Nature Communications, Jan-12-2023, Volume 14, Issue 1, (2023)

Characterization of a Bacteriophage GEC_vB_Bfr_UZM3 Active against ., Bakuradze, Nata, Merabishvili Maia, Kusradze Ia, Ceyssens Pieter-Jan, Onsea Jolien, Metsemakers Willem-Jan, Grdzelishvili Nino, Natroshvili Guliko, Tatrishvili Tamar, Lazvliashvili Davit, et al. , Viruses, 2023 Apr 25, Volume 15, Issue 5, (2023)

Characterization of a Bacteriophage GEC_vB_Bfr_UZM3 Active against Bacteroides fragilis, Bakuradze, Nata, Merabishvili Maia, Kusradze Ia, Ceyssens Pieter-Jan, Onsea Jolien, Metsemakers Willem-Jan, Grdzelishvili Nino, Natroshvili Guliko, Tatrishvili Tamar, Lazvliashvili Davit, et al. , Viruses, Jan-05-2023, Volume 15, Issue 5, (2023)

Foundation of the Belgian Society for Viruses of Microbes and Meeting Report of Its Inaugural Symposium., Latka, Agnieszka, Aertsen Abram, Boeckaerts Dimitri, Blasdel Bob, Ceyssens Pieter-Jan, Garcia-Pino Abel, Gillis Annika, Lavigne Rob, Lima-Mendez Gipsi, Matthijnssens Jelle, et al. , Viruses, 2023 May 22, Volume 15, Issue 5, (2023)

Foundation of the Belgian Society for Viruses of Microbes and Meeting Report of Its Inaugural Symposium, Latka, Agnieszka, Aertsen Abram, Boeckaerts Dimitri, Blasdel Bob, Ceyssens Pieter-Jan, Garcia-Pino Abel, Gillis Annika, Lavigne Rob, Lima-Mendez Gipsi, Matthijnssens Jelle, et al. , Viruses, Jan-05-2023, Volume 15, Issue 5, (2023)

A genomic appraisal of invasive Salmonella Typhimurium and associated antibiotic resistance in sub-Saharan Africa., Van Puyvelde, Sandra, de Block Tessa, Sridhar Sushmita, Bawn Matt, Kingsley Robert A., Ingelbeen Brecht, Beale Mathew A., Barbé Barbara, Jin Jeon, Hyon, Mbuyi-Kalonji Lisette, et al. , Nat Commun, 2023 Oct 23, Volume 14, Issue 1, (2023)

A genomic appraisal of invasive Salmonella Typhimurium and associated antibiotic resistance in sub-Saharan AfricaAbstract, Van Puyvelde, Sandra, de Block Tessa, Sridhar Sushmita, Bawn Matt, Kingsley Robert A., Ingelbeen Brecht, Beale Mathew A., Barbé Barbara, Jin Jeon, Hyon, Mbuyi-Kalonji Lisette, et al. , Nature Communications, Jan-12-2023, Volume 14, Issue 1, (2023)

A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia., Cuypers, Wim L., Meysman Pieter, Weill François-Xavier, Hendriksen Rene S., Getenet Beyene, Wain John, Nair Satheesh, Chattaway Marie A., Perez-Sepulveda Blanca M., Ceyssens Pieter-Jan, et al. , Nat Commun, 2023 Jun 14, Volume 14, Issue 1, (2023)

Multicenter interlaboratory study of routine systems for the susceptibility testing of temocillin using a challenge panel of multidrug-resistant strains., Deckers, Corentin, Bélik Florian, Denis Olivier, Montesinos Isabel, Bogaerts Pierre, Boelens Jerina, Brassinne Laetitia, Descy Julie, Desmet Stefanie, Gils Sarah, et al. , Eur J Clin Microbiol Infect Dis, 2023 Dec, Volume 42, Issue 12, (2023)

Multicenter interlaboratory study of routine systems for the susceptibility testing of temocillin using a challenge panel of multidrug-resistant strains, Deckers, Corentin, Bélik Florian, Denis Olivier, Montesinos Isabel, Bogaerts Pierre, Van den Abeele Anne Marie, Ceyssens Pieter-Jan, Huang Te-Din, Boelens Jerina, Brassinne Laetitia, et al. , European Journal of Clinical Microbiology & Infectious Diseases, Jan-12-2023, Volume 42, Issue 12, (2023)

The phage-encoded PIT4 protein affects multiple two-component systems of Pseudomonas aeruginosa, Schroven, Kaat, Putzeys Leena, Kerremans Alison, Ceyssens Pieter-Jan, Vallino Marta, Paeshuyse Jan, Haque Farhana, Ahmed Yusuf, Koch Matthias D., and Lavigne Rob , Microbiol Spectr, 2023 Nov 14, (2023)

Pyrogen testing of phage therapeutic products, Willocx, Marie, de Jode Mathieu, Laurent Flore, Merabishvili Maya, Lavigne Rob, Ceyssens Pieter-Jan, and Vanhee Celine , BSVoM Symposium, 08/09/2023, Liège, Belgium, (2023)

Salmonella Durban meningitis: case report and genomics study., Nanga Diasi, Christelle, Ceyssens Pieter-Jan, Vodolazkaia Alexandra, Mukovnikova Marina, Dorval Sarah, Bauraind Olivia, and Mattheus Wesley , BMC Infect Dis, 2023 May 20, Volume 23, Issue 1, (2023)

Targeted Chromosomal Barcoding Establishes Direct Genotype-Phenotype Associations for Antibiotic Resistance in Mycobacterium abscessus., Calvet-Seral, Juan, Crespo-Yuste Estefanía, Mathys Vanessa, Rodriguez-Villalobos Hector, Ceyssens Pieter-Jan, Martin Anandi, and Gonzalo-Asensio Jesús , Microbiol Spectr, 2023 Mar 29, (2023)

Using a combination of short and long read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum-beta-lactamases (ESBL) in clinical Shigella and Salmonella isolates in Belgium, Berbers, Bas, Vanneste Kevin, Roosens Nancy, Marchal K., Ceyssens Pieter-Jan, and De Keersmaecker Sigrid C. J. , Microbial Genomics, 23/01/2023, Volume 9:000925, Number 23, (2023)

Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium, Berbers, Bas, Vanneste Kevin, Roosens Nancy, Marchal Kathleen, Ceyssens Pieter-Jan, and De Keersmaecker Sigrid C. J. , Microbial Genomics, Nov-01-2024, Volume 9, Issue 1, (2023)

The AMR-ARRAY: A modular bead array detecting ?-lactam, (fluoro) quinolone, colistin, aminoglycoside and macrolide resistance determinants in Gram-negative bacteria., Timmermans, Michaël, Latour Samuel, Ceyssens Pieter-Jan, Garcia-Graells Cristina, Kowalewicz Carole, Fretin David, Denis Olivier, Wattiau P, and Boland Cécile , J Microbiol Methods, 2022 05, Volume 196, (2022)

Metabolic reprogramming of Pseudomonas aeruginosa by phage-based quorum sensing modulation., Hendrix, Hanne, Zimmermann-Kogadeeva Maria, Zimmermann Michael, Sauer Uwe, De Smet Jeroen, Muchez Laurens, Lissens Maries, Staes Ines, Voet Marleen, Wagemans Jeroen, et al. , Cell Rep, 2022 02 15, Volume 38, Issue 7, (2022)

Multicentre study on the reproducibility of MALDI-TOF MS for nontuberculous mycobacteria identification., Rodriguez-Temporal, David, Alcaide Fernando, Marekovi? Ivana, O'Connor James Anthony, Gorton Rebecca, van Ingen Jakko, Van den Bossche An, Héry-Arnaud Genevieve, Beauruelle Clémence, Orth-Höller Dorothea, et al. , Sci Rep, 2022 Jan 24, Volume 12, Issue 1, (2022)

Validation of Fourier Transform Infrared Spectroscopy for Serotyping of Streptococcus pneumoniae., Passaris, I, Mauder N, Kostrzewa M, Burckhardt I, Zimmermann S, van Sorge N M., Slotved H-C, Desmet S, and Ceyssens Pieter-Jan , J Clin Microbiol, 2022 Jul 20, Volume 60, Issue 7, (2022)

The bacteriophage LUZ24 "Igy" peptide inhibits the Pseudomonas DNA gyrase., De Smet, Jeroen, Wagemans Jeroen, Boon Maarten, Ceyssens Pieter-Jan, Voet Marleen, Noben Jean-Paul, Andreeva Julia, Ghilarov Dmitry, Severinov Konstantin, and Lavigne Rob , Cell Rep, 2021 Aug 24, Volume 36, Issue 8, (2021)

A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches, Bogaerts, Bert, Delcourt Thomas, Soetaert Karine, Boarbi Samira, Ceyssens Pieter-Jan, Winand Raf, Van Braekel Julien, De Keersmaecker Sigrid C. J., Roosens Nancy, Marchal Kathleen, et al. , J Clin Microbiol, 2021 Mar 31, (2021)

Coverage of the national surveillance system for human Salmonella infections, Belgium, 2016-2020., Van Goethem, Nina, Van den Bossche An, Ceyssens Pieter-Jan, Lajot Adrien, Coucke Wim, Vernelen Kris, Roosens Nancy, De Keersmaecker Sigrid C. J., Van Cauteren Dieter, and Mattheus Wesley , PLoS One, 2021, Volume 16, Issue 8, (2021)

Genomic epidemiology of persistently circulating MDR Shigella sonnei strains associated with men who have sex with men (MSM) in Belgium (2013?19), Fischer, Nathalie, Maex Margo, Mattheus Wesley, Van den Bossche An, Van Cauteren Dieter, Laisnez Valeska, Hammami Naïma, and Ceyssens Pieter-Jan , Journal of Antimicrobial Chemotherapy, Sep-10-2022, Volume 77, Issue 1, (2021)

A molecular assay for rapidly distinguishing the AviPro SALMONELLA VAC T vaccine strain from wild-type field isolates, Ceyssens, Pieter-Jan, Van den Bossche An, Phan Lac Kim, Van Hoorde Koenraad, and Mattheus Wesley , Journal of Microbiological Methods, May-2021, Volume 184, (2021)

Outbreak of Central American born Shigella sonnei in two youth camps in Belgium in the summer of 2019, Van den Bossche, An, Ceyssens Pieter-Jan, Denayer Sarah, Hammami Naïma, van den Beld Maaike, Dallman Timothy J., and Mattheus Wesley , European Journal of Clinical Microbiology & Infectious Diseases , 2021 Feb 11, (2021)

Phage Biobank: Present Challenges and Future Perspectives., Lin, Ruby Cy, Sacher Jessica C., Ceyssens Pieter-Jan, Zheng Jan, Khalid Ali, and Iredell Jonathan R. , Curr Opin Biotechnol, 2021 04, Volume 68, (2021)

Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation., Bogaerts, Bert, Winand Raf, Van Braekel Julien, Mattheus Wesley, De Keersmaecker Sigrid C. J., Roosens Nancy, Marchal Kathleen, Vanneste Kevin, and Ceyssens Pieter-Jan , Microorganisms, 2021 Apr 06, Volume 9, Issue 4, (2021)

Retrospective evaluation of routine whole genome sequencing of Mycobacterium tuberculosis at the Belgian National Reference Center, 2019., Soetaert, Karine, Ceyssens Pieter-Jan, Boarbi Samira, Bogaerts Bert, Delcourt Thomas, Vanneste Kevin, De Keersmaecker Sigrid C. J., Roosens Nancy, Vodolazkaia Alexandra, Mukovnikova Marina, et al. , Acta Clin Belg, 2021 Nov 09, (2021)

Whole-genome sequencing for TB source investigations: principles of ethical precision public health., Van Rie, A, de Viedma D G., Meehan C, Comas I, Heupink T H, De Vos E, de Oñate W A, Mathys Vanessa, Ceyssens Pieter-Jan, Groenen G, et al. , Int J Tuberc Lung Dis, 2021 Mar 01, Volume 25, Issue 3, (2021)

Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination., Berbers, Bas, Ceyssens Pieter-Jan, Bogaerts Pierre, Vanneste Kevin, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Antibiotics (Basel), 2020 Aug 11, Volume 9, Issue 8, (2020)

Genomic epidemiology of emerging ESBL-producing  Kentucky  in Europe., Coipan, Claudia E., Westrell Therese, van Hoeck Angela H. A. M., Alm Erik, Kotila Saara, Berbers Bas, De Keersmaecker Sigrid C. J., Ceyssens Pieter-Jan, Borg Maria Louise, Chattaway Marie, et al. , Emerg Microbes Infect, 2020 Dec, Volume 9, Issue 1, (2020)

The Phage-Encoded -Acetyltransferase Rac Mediates Inactivation of  Transcription by Cleavage of the RNA Polymerase Alpha Subunit., Ceyssens, Pieter-Jan, De Smet Jeroen, Wagemans Jeroen, Akulenko Natalia, Klimuk Evgeny, Hedge Subray, Voet Marleen, Hendrix Hanne, Paeshuyse Jan, Landuyt Bart, et al. , Viruses, 2020 09 02, Volume 12, Issue 9, (2020)

Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei., Hao, Chung The, Boinett Christine, Pham Duy Thanh, Jenkins Claire, Weill François-Xavier, Howden Benjamin P., Valcanis Mary, De Lappe Niall, Cormican Martin, Wangchuk Sonam, et al. , Nat Commun, 2019 10 23, Volume 10, Issue 1, (2019)

Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198., Hawkey, Jane, Le Hello Simon, Doublet Benoît, Granier Sophie A., Hendriksen Rene S., Fricke Florian W., Ceyssens Pieter-Jan, Gomart Camille, Billman-Jacobe Helen, Holt Kathryn E., et al. , Microb Genom, 2019 07, Volume 5, Issue 7, (2019)

RNA-Based susceptibility testing of Mycobacterium tuberculosis, Van den Bossche, An, Bhattacharyya Roby, Coppee Jean-Yves, Baulard Alain, Hung Deborah, Mathys Vanessa, and Ceyssens Pieter-Jan , 29th ECCMID, 1316 April, 2019, Issue ESCMID, Amsterdam, The Netherlands, (2019)

Shifting national surveillance of Shigella infections toward geno-serotyping by the development of a tailored Luminex assay and NGS workflow., Ventola, Eleonora, Bogaerts Bert, De Keersmaecker Sigrid C. J., Vanneste Kevin, Roosens Nancy, Mattheus Wesley, and Ceyssens Pieter-Jan , Microbiologyopen, 2019 Mar 28, (2019)

Strong increase of true and false positive mycobacterial cultures sent to the National Reference Centre in Belgium, 2007 to 2016., Soetaert, Karine, Subissi Lorenzo, Ceyssens Pieter-Jan, Vanfleteren Brigitte, Chantrenne Marianne, Asikainen Tommi, Duysburgh Els, and Mathys Vanessa , Euro Surveill, 2019 Mar, Volume 24, Issue 11, (2019)

Transcriptional profiling of a laboratory and clinical Mycobacterium tuberculosis strain suggests respiratory poisoning upon exposure to delamanid, Van den Bossche, An, Varet Hugo, Sury Amandine, Sismeiro Odile, Legendre Rachel, Coppee Jean-Yves, Mathys Vanessa, and Ceyssens Pieter-Jan , Tuberculosis, Jan-07-2019, Volume 117, (2019)

Transcriptional profiling of a laboratory and clinical Mycobacterium tuberculosis strain suggests respiratory poisoning upon exposure to delamanid., Van den Bossche, An, Varet Hugo, Sury Amandine, Sismeiro Odile, Legendre Rachel, Coppee Jean-Yves, Mathys Vanessa, and Ceyssens Pieter-Jan , Tuberculosis (Edinb), 2019 07, Volume 117, (2019)

Transcriptional profiling of Mycobacterium tuberculosis suggests respiratory poisoning upon exposure to delamanid, Van den Bossche, An, Varet Hugo, Sury Amandine, Sismeiro Odile, Legendre Rachel, Coppee Jean-Yves, Mathys Vanessa, and Ceyssens Pieter-Jan , 40th ESM conference, 30/6-3/7/2019, Issue European Society of Mycobacteria, Valencia, Spain, (2019)

Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center:  as a Proof-of-Concept., Bogaerts, Bert, Winand Raf, Qiang Fu, Van Braekel Julien, Ceyssens Pieter-Jan, Mattheus Wesley, Bertrand Sophie, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , Front Microbiol, 2019, Volume 10, (2019)

Aloe Emodin Reduces Phthiodiolone Dimycocerosate Potentiating Vancomycin Susceptibility on Mycobacteria, Rens, Céline, Ceyssens Pieter-Jan, Laval Françoise, Lefèvre Philippe, Mathys Vanessa, Daffé Mamadou, and Fontaine Véronique , Indian Journal of Microbiology, Apr-05-2018, (2018)

Evaluation of Non-Tuberculous Mycobacteria identification with maldi-tof mass spectrometry by applying sonication: a multicenter study, EU Mycobacteria-MALDI study group, Van den Bossche An, and Ceyssens Pieter-Jan , ECCMID 2018, 04/2018, Issue ESCMID, Madrid, Spain, (2018)

The Magistral Phage., Pirnay, Jean-Paul, Verbeken Gilbert, Ceyssens Pieter-Jan, Huys Isabelle, De Vos Daniel, Ameloot Charlotte, and Fauconnier Alan , Viruses, Volume 10, Issue 2, (2018)

Preparing cDNA Libraries from Lytic Phage-Infected Cells for Whole Transcriptome Analysis by RNA-Seq., Blasdel, Bob, Ceyssens Pieter-Jan, and Lavigne Rob , Methods Mol Biol, 2018, Volume 1681, Issue 1681, Number 1941, (2018)

Rapid detection of tetracycline resistance in bovine Pasteurella multocida isolates by MALDI Biotyper antibiotic susceptibility test rapid assay (MBT-ASTRA)., Van Driessche, Laura, Bokma Jade, Gille Linde, Ceyssens Pieter-Jan, Sparbier Katrin, Haesebrouck Freddy, Deprez Piet, Boyen Filip, and Pardon Bart , Sci Rep, 2018 Sep 11, Volume 8, Issue 1, (2018)

RNA-based drug susceptibility testing of Mycobacterium tuberculosis, Van den Bossche, An, Bhattacharyya Roby, Coppee Jean-Yves, Rigouts Leen, Baulard Alain, Hung Deborah, Mathys Vanessa, and Ceyssens Pieter-Jan , 39th Annual Congress of the European Society of Mycobacteriology , 07/2018, Issue ESM, Dresden, Germany, (2018)

RNA-based drug susceptibility testing of Mycobacterium tuberculosis, Van den Bossche, An, Bhattacharyya Roby, Coppee Jean-Yves, Rigouts Leen, Baulard Alain, Vodolazkaia Alexandra, Hung Deborah, Mathys Vanessa, and Ceyssens Pieter-Jan , 2nd St. Petersburg Symposium on Tuberculosis and Mycobacteria: Molecular Approach, Issue Institut Pasteur Sint Petersburg, Sint Petersburg, (2018)

RNA-based drug susceptibility testing of Mycobacterium tuberculosis, Van den Bossche, An, Rigouts Leen, Coppee Jean-Yves, Mathys Vanessa, and Ceyssens Pieter-Jan , Combating resistance : microbes and vectors, 16/11/2018, Issue Institute Pasteur, Paris, France, (2018)

Clinical Impact of New Lab Technologies, Ceyssens, Pieter-Jan , Seminar on Infectious Diseases, 17/04/2017, Brussels, Belgium, (2017)

Global transcriptional analyses of Mycobacterium tuberculosis using old and new drugs, Van den Bossche, An, Ceyssens Pieter-Jan, Bhattacharyya Roby, Hung Deborah, and Mathys Vanessa , ECCMID 2017, 04/2017, Issue ESCMID, Vienna, Austria, (2017)

Global transcriptional analyses of Mycobacterium tuberculosis using old and new drugs, Van den Bossche, An, Ceyssens Pieter-Jan, Bhattacharyya Roby, Hung Deborah, and Mathys Vanessa , 38th Annual Congress of the European Society of Mycobacteriology, 06/2017, Issue ESM, Sibenik, Craotia, (2017)

Great diversity in Mcr-1 encoding plasmids among human E. coli and Salmonella spp. isolates in Belgium , Ceyssens, Pieter-Jan, Bogaerts Pierre, De Keersmaecker Sigrid C. J., Bertrand Sophie, and Glupzynski Youri , ECCMID 2017, 17/05/2017, Volume 1, Issue ESCMID, Vienna, Austria, (2017)

How To: Identify Non-Tuberculous Mycobacterium Species By Using Maldi-Tof Mass Spectrometry., Alcaide, Fernando, Amlerová J, Bou Germán, Ceyssens Pieter-Jan, Coll Pere, Corcoran Dan, Fangous Marie-Sarah, González-Álvarez Iván, Gorton Rebecca, Greub Gilbert, et al. , Clin Microbiol Infect, 2017 Nov 21, (2017)

MALDI-TOF for the Identification and Drug Sensitivity Testing of Mycobacteria , Ceyssens, Pieter-Jan , Hot Topics in Microbiology - Join the Grapevine, 12/05/2017, Volume 32, Issue BRITISH SOCIETY FOR MICROBIAL TECHNOLOGY, PHE, Colindale, UK, (2017)

Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Combined Species Identification and Drug Sensitivity Testing in Mycobacteria., Ceyssens, Pieter-Jan, Soetaert Karine, Timke Markus, Van den Bossche An, Sparbier Katrin, De Cremer Koen, Kostrzewa Markus, Hendrickx Marijke, and Mathys Vanessa , J Clin Microbiol, 2017 Feb, Volume 55, Issue 2, p.624-634, (2017)

Multicentric study on the improved identification of Non-Tuberculous Mycobacteria with MALDI-TOF MS using three different preprocessing protocols, EU Mycobacteria-MALDI study group, Van den Bossche An, and Ceyssens Pieter-Jan , ECCMID 2017, 04/2017, Issue ESCMID, Vienna, Austria, (2017)

Salmonella enterica serovar Typhi Producing CTX-M-15 Extended Spectrum ?-Lactamase in the Democratic Republic of the Congo., Phoba, Marie-France, Barbé Barbara, Lunguya Octavie, Masendu Lysette, Lulengwa Deo, Dougan Gordon, Wong Vanessa K., Bertrand Sophie, Ceyssens Pieter-Jan, Jacobs Jan, et al. , Clin Infect Dis, 2017 Oct 01, Volume 65, Issue 7, (2017)

Salmonella infections: identification techniques for successful investigations, Bertrand, Sophie, Mattheus Wesley, Ceyssens Pieter-Jan, Gand Mathieu, Vanhoof Raymond, Botteldoorn N, Denayer Sarah, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Labinfo, 2017, Volume 16, Number 47, Belgium, (2017)

Viral interference of the bacterial RNA metabolism machinery., Dendooven, Tom, An Van den Bossch, Hendrix Hanne, Ceyssens Pieter-Jan, Voet Marleen, Bandyra K J., De Maeyer Marc, Aertsen Abram, Noben Jean-Paul, Hardwick Steven W., et al. , RNA Biol, 2017 Jan 02, Volume 14, Issue 1, Number 10, p.6-10, (2017)

Development of a Luminex xTAG® assay for cost-effective multiplex detection of ?-lactamases in Gram-negative bacteria., Ceyssens, Pieter-Jan, Garcia-Graells Cristina, Fux Frédéric, Botteldoorn N, Mattheus Wesley, Wuyts Véronique, De Keersmaecker Sigrid C. J., Dierick Katelijne, and Bertrand Sophie , J Antimicrob Chemother, 2016 Sep, Volume 71, Issue 9, p.2479-83, (2016)

Development of Luminex assays for identification of antimicrobial resistance genes., Ceyssens, Pieter-Jan, and Bertrand Sophie , i3S meeting, 0/0/2016, Issue i3S meeting, (2016)

Diversity of Listeria monocytogenes Strains of Clinical and Food Chain Origins in Belgium between 1985 and 2014., Bertrand, Sophie, Ceyssens Pieter-Jan, Yde M, Dierick Katelijne, Boyen F, Vanderpas Jean, Vanhoof R, and Mattheus Wesley , PLoS One, 2016, Volume 11, Issue 10, p.e0164283, (2016)

High coverage metabolomics analysis reveals phage-specific alterations to Pseudomonas aeruginosa physiology during infection., De Smet, Jeroen, Zimmermann Michael, Kogadeeva Maria, Ceyssens Pieter-Jan, Vermaelen Wesley, Blasdel Bob, Bin Jang Ho, Sauer Uwe, and Lavigne Rob , ISME J, 2016 Aug, Volume 10, Issue 8, Number 1835, p.1823-35, (2016)

MALDI-TOF for drug resistance testing in mycobacterium tuberculosis, Ceyssens, Pieter-Jan, Soetaert Karine, De Cremer Koen, Bertrand Sophie, Hendrickx Marijke, and Mathys Vanessa , ECCMID 2016, 9/4/2016, Issue ECCMID, NA, (2016)

MALDI-TOF for the identification of Mycobacteria and their drug resistance profiles, Van den Bossche, An, Ceyssens Pieter-Jan, Hendrickx Marijke, and Mathys Vanessa , 37th Annual Congress of the European Society of Mycobacteriology, 06/2017, Catania, Sicily, Italy, (2016)

Microbiological, clinical and molecular findings of non-typhoidal Salmonella bloodstream infections associated with malaria, Oriental Province, Democratic Republic of the Congo., Falay, Dadi, Kuijpers Laura Maria Fran, Phoba Marie-France, De Boeck Hilde, Lunguya Octavie, Vakaniaki Emmanuel, Bertrand Sophie, Mattheus Wesley, Ceyssens Pieter-Jan, Vanhoof Raymond, et al. , BMC Infect Dis, 2016 Jun 10, Volume 16, Issue 1, p.271, (2016)

Molecular Analysis of Rising Fluoroquinolone Resistance in Belgian Non-Invasive Streptococcus pneumoniae Isolates (1995-2014)., Ceyssens, Pieter-Jan, Van Bambeke Françoise, Mattheus Wesley, Bertrand Sophie, Fux Frédéric, Van Bossuyt Eddie, Damée Sabrina, Nyssen Henry-Jean, De Craeye Stéphane, Verhaegen Jan, et al. , PLoS One, 2016, Volume 11, Issue 5, p.e0154816, (2016)

Structural elucidation of a novel mechanism for the bacteriophage-based inhibition of the RNA degradosome., Van den Bossche, An, Hardwick Steven W., Ceyssens Pieter-Jan, Hendrix Hanne, Voet Marleen, Dendooven Tom, Bandyra Katarzyna J., De Maeyer Marc, Aertsen Abram, Noben Jean-Paul, et al. , Elife, 2016 Jul 22, Volume 5, (2016)

WIV-ISP's experiences in the use of MALDI-TOF for the identification of Mycobacteria and their drug resistance profiles, Van den Bossche, An, and Ceyssens Pieter-Jan , 2016, FARES/VRGT Brussels, Belgium, (2016)

20 jaar surveillance van antibioticaresistentie in niet invasieve pneumokokkeninfecties., Vanhoof, R., and Ceyssens Pieter-Jan , VUB-UZ Ma-na-Ma navormingsprogramma Klinische Biologie: 20 jaar pneumokokken surveillance in België., 0/0/2015, Issue VUB-UZ Ma-na-Ma navormingsprogramma Klinische Biologie, NA, (2015)

Antimicrobial resistance testing in 2020: Will we still be looking at the phenotype? , Ceyssens, Pieter-Jan, Mattheus Wesley, Mathys Vanessa, Vanhoof R., Kalai Michael, and Bertrand Sophie , RIIP Meeting, 0/0/2015, Issue Institut Pasteur, (2015)

Blueprint of serotype distribution and antimicrobial resistance in human salmonellosis in Belgium (2009-2013), Ceyssens, Pieter-Jan, Mattheus Wesley, Vanhoof R., and Bertrand Sophie , International Conference on Antimicrobial Research, 17/5/2015, Volume 4, Issue ICAR, Number 2, Madrid, Spain, (2015)

Development of xTAG®-based assays as a tailor-made solution in the genotyping of antimicrobial resistance in Enterobacteriaceae., Ceyssens, Pieter-Jan, Mattheus Wesley, and Bertrand Sophie , xMAP connect meeting, 0/0/2015, Issue xMAP connect, NA, (2015)

Evolution of beta-lactam resistance in non-invasive clinical isolates of  Streptococcus   pneumoniae  collected in Belgium in a 20 year survey (1995 to 2014)., Vanhoof, R., Bertrand Sophie, Ceyssens Pieter-Jan, Damee S., Fux F., Mattheus Wesley, Nyssen H.J., Van Bossuyt E., Van Eldere J., Verhaegen Jan, et al. , 35 e  Réunion Interdisciplinaire de chimiothérapie anti-infectieuse., 0/0/2015, Issue XX, Paris, France, (2015)

Invasive Salmonella Infections at Multiple Surveillance Sites in the Democratic Republic of the Congo, 2011-2014., Mbuyi Kalonji, Lisette, Post Annelies, Phoba Marie-France, Falay Dadi, Ngbonda Dauly, Muyembe Jean-Jacques, Bertrand Sophie, Ceyssens Pieter-Jan, Mattheus Wesley, Verhaegen Jan, et al. , Clin Infect Dis, 2015 Nov 01, Volume 61 Suppl 4, p.S346-53, (2015)

Macrolide and tetracycline resistance and the presence of  mef A,  erm B and  tet M genes in non-invasive clinical isolates of  Streptococcus   pneumoniae  collected in Belgium in a 20 year survey (1995 to 2014)., Vanhoof, R., Bertrand Sophie, Ceyssens Pieter-Jan, Damee S., Fux F., Mattheus Wesley, Nyssen H.J., Van Bossuyt E., Van Eldere J., Verhaegen Jan, et al. , 35 e  Réunion Interdisciplinaire de chimiothérapie anti-infectieuse., 0/0/2015, Issue XX, Paris, France, (2015)

Microbial and clinical findings of an outbreak of non-typhoid  Salmonella  bloodstream infection associated with severe anemia, Oriental Province, Democratic Republic of Congo., Falay, D., Kuijpers L., Phoba M.F., De Boeck H., Lunguya O., Vakanyaki E., Bertrand Sophie, Ceyssens Pieter-Jan, Vanhoof R., Devlieger H., et al. , 9 th  International Conference on Typhoid and Invasive NTS Disease., 0/0/2015, Issue XX, (2015)

Molecular surveillance of rising fluoroquinolone resistance in non-invasive  S. pneumoniae  isolates in Belgium collected in a survey (1995-2014), Ceyssens, Pieter-Jan, Van Bambeke F., Bertrand Sophie, Damee S., Fux F., Mattheus Wesley, Nyssen H.J., Van Bossuyt E., Verhaegen Jan, The Belgian Streptococcus pneumoniae study group, et al. , Plos One, 26/05/2016, Volume 11, Issue 5, (2015)

The search for therapeutic bacteriophages uncovers one new subfamily and two new genera of Pseudomonas-infecting Myoviridae., Henry, Marine, Bobay Louis-Marie, Chevallereau Anne, Saussereau Emilie, Ceyssens Pieter-Jan, and Debarbieux Laurent , PLoS One, 2015, Volume 10, Issue 1, p.e0117163, (2015)

Trends in serotype distribution and antimicrobial susceptibility in Salmonella enterica isolates from humans in Belgium, 2009 to 2013., Ceyssens, Pieter-Jan, Mattheus Wesley, Vanhoof Raymond, and Bertrand Sophie , Antimicrob Agents Chemother, 2015 Jan, Volume 59, Issue 1, Number 552, p.544-52, (2015)

Development of giant bacteriophage phiKZ is independent of the host transcription apparatus, Ceyssens, Pieter-Jan, Minakhin L., Yakunina M., Klimuk E., Blasdel B., De Smet J., Noben J.P., Blasi U., Severinov K., and Lavigne R. , Journal of Virology, 2/9/2014, Volume 88, Issue 18, Number 10510, p.10501 - 10510, (2014)

Functional elucidation of antibacterial phage ORFans targeting Pseudomonas aeruginosa, Wagemans, J., Blasdel B.G., Uytterhoeven B., De Smet J., Paeshuyse J., Cenens W., Aertsen A., Uetz P., Delattre A.S., Ceyssens Pieter-Jan, et al. , Cell Microbiol., 0/12/2014, Volume 16, Issue 12, Number 1835, p.1822 - 1835, (2014)

Systematic identification of hypothetical bacteriophage proteins targeting key protein complexes of pseudomonas aeruginosa, Ceyssens, Pieter-Jan, De Smet J., Hendrix H., Bellon H., Leimer N., Wagemans J., Delattre A.S., Cenens W., Aertsen A., Landuyt B., et al. , Journal of Proteome Research, 3/10/2014, Volume 13, Issue 10, Number 4456, p.4446 - 4456, (2014)

A multifaceted study of Pseudomonas aeruginosa shutdown by virulent podovirus LUZ19, Lavigne, R., Lecoutere E., Wagemans J., Cenens W., Aertsen A., Schoofs L., Landuyt B., Paeshuyse J., Scheer M., Schobert M., et al. , MBio., 19/3/2013, Volume 4, Issue 2, Number 13, p.e00061 - 13, (2013)

Microbiological and molecular assessment of bacteriophage ISP for the control of Staphylococcus aureus, Vandersteegen, K., Mattheus Wesley, Ceyssens Pieter-Jan, Bilocq F., De Vos D., Pirnay J.P., Noben J.P., Merabishvili M., Lipinska U., Hermans K., et al. , PLoS One, 0/0/2011, Volume 6, Issue 9, p.e24418, (2011)

Genomic analysis of Pseudomonas aeruginosa phages LKD16 and LKA1: establishment of the phiKMV subgroup within the T7 supergroup., Ceyssens, Pieter-Jan, Lavigne Rob, Mattheus Wesley, Chibeu Andrew, Hertveldt Kirsten, Mast Jan, Robben Johan, and Volckaert Guido , J Bacteriol, 2006 Oct, Volume 188, Issue 19, (2006)

Antimicrobial Resistance in Humans, Ceyssens, Pieter-Jan , (0)