Search results - 48 results
Sheeppox virus genome sequences from the European outbreaks in Spain, Bulgaria, and Greece in 2022-2024.
Publication Type: Peer reviewed scientific article Authors: Floris C Breman; Andy Haegeman; Wannes Philips; Krešić, Nina; Hoffman, Stefan; Sigrid C.J. De Keersmaecker; Nancy Roosens; Agüero, ...
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities
Publication Type: Peer reviewed scientific article Authors: Van Uffelen, Alexander; Posadas, Andrés; Roosens, Nancy H. C.; Marchal, Kathleen; De Keersmaecker, Sigrid C. J.; Vanneste, Kevin Source: ...
Real-time cluster detection of Listeria to enhance outbreak investigation in Belgium
Next-Generation sequencing. The obtained data are analysed using an in-house Listeria pipeline (v1.2) in Galaxy, which amongst other analyses performs cgMLST (core genome MultiLocus Sequence Typing) based on the ...
Genomic comparison between and and analysis of peptide-based biomarkers for serodiagnosis.
Fretin, David; Marché, Silvie Source: Front Vet Sci, Volume 11 (2024) Keywords: Antigens B-cell epitopes Diagnosis Mycobacterium bovis Mycobacterium microti Tuberculosis whole-genome sequencing Abstract: In ...
RNA sequencing of avian paramyxovirus (Paramyxoviridae, Avulavirinae) isolates from wild mallards in Belgium, 2021: complete genomes and coinfections.
genome segments of an AIV of subtype H11N9 could be de novo assembled from the sequencing data. Besides an AIV coinfection, RNA metagenomic data from the APMV-4 isolate also showed evidence of ...
Whole-Genome Sequencing-Based Screening of MRSA in Patients and Healthcare Workers in Public Hospitals in Benin.
These isolates were assigned to five sequence types (ST s), with ST8 (55.56%, n = 15/27), ST152 (18.52%, n = 5/27), and ST121 (18.52%, n = 5/27) being the most common. These 27 isolates carried multiple ...
A multi-country One Health foodborne outbreak simulation exercise: cross-sectoral cooperation, data sharing and communication.
Publication Type: Peer reviewed scientific article Authors: Alves, Frederico; Artursson, Karin; Bloch, Juliette; Brisabois, Anne; Hein Imberechts; Jokelainen, Pikka; La Ragione, Roberto; Lindblad, ...
First Belgian Report of Ertapenem Resistance in an ST11 Klebsiella Pneumoniae Strain Isolated from a Dog Carrying blaSCO-1 and blaDHA-1 Combined with Permeability Defects
Antibiotics, Volume 11, Issue 9 (2022) Keywords: antimicrobial resistance (AMR) carbapenem companion animal emerging risk hybrid sequencing Klebsiella pneumoniae OmpK37 Sepsis sequence type 11 Abstract: ...
Epidemiology of the Staphylococcus aureus CA-MRSA USA300 in Belgium
Publication Type: Peer reviewed scientific article Authors: Maria A Argudín; Deplano, Ariane; Nonhoff, Claire; Nicolas Yin; Charlotte Michel; Martiny, Delphine; Sigrid C.J. De Keersmaecker; Hallin, ...
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods
detection and sequence typing. The workflow supports three commonly used bioinformatics approaches for the detection of genes and alleles: alignment with blast+, kmer-based read mapping with KMA, and direct ...