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Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products
* Source: Food Chemistry: Molecular Sciences, Volume 10 (2025) Keywords: Antimicrobial resistance food enzyme phylogenomics Strain-level deconvolution Abstract: Genetically modified microorganisms (GMM) are ...
The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
collections Cyanobacteria Genomics Gloeobacterales Metagenomics nextflow phylogenomics Phylogeny Singularity containers Workflow Abstract: Background: Microbial culture collections play a key role in taxonomy ...
Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing
whole-genome sequencing (WGS) and subsequently characterized in terms of sequence type (ST), virulence gene profile, antimicrobial resistance (AMR) gene profile, plasmid content, and phylogenomic relationships. ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
evaluated not only separately but also by integrating samples sequenced by different technologies/chemistries into the same phylogenomic analysis. Additionally, the minimum sequencing time required to obtain ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
evaluated not only separately but also by integrating samples sequenced by different technologies/chemistries into the same phylogenomic analysis. Additionally, the minimum sequencing time required to obtain ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
evaluated not only separately but also by integrating samples sequenced by different technologies/chemistries into the same phylogenomic analysis. Additionally, the minimum sequencing time required to obtain ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
phylogenomic analysis. Additionally, the minimum sequencing time required to obtain accurate phylogenetic results using nanopore sequencing was evaluated. PACU allowed accurate identification of outbreak ...
Whole-Genome Sequence Approach and Phylogenomic Stratification Improve the Association Analysis of Mutations With Patient Data in Influenza Surveillance
Publication Type: Peer reviewed scientific article Authors: Laura Van Poelvoorde; Kevin Vanneste; Sigrid C.J. De Keersmaecker; Isabelle Thomas; Nina Van Goethem; Steven Van Gucht; Xavier Saelens; Nancy Roosens Source: Frontiers in Microbiology, Volume 13 ...
Whole-genome sequencing-based phylogenomic investigation of unexpected Bacillus cereus contaminations collected from commercial vitamin B2 food and feed additives sold on the Belgian market
Publication Type: Scientific poster, presentation or proceeding Authors: Bert Bogaerts; Marie-Alice Fraiture; Astrid, Huwaert; Tom Van Nieuwenhuysen; Bram Jacobs; Koenraad Van Hoorde; Sigrid C.J. De Keersmaecker; Nancy Roosens; Kevin Vanneste Source: Appl ...
Whole-Genome Sequence Approach and Phylogenomic Stratification Improve the Association Analysis of Mutations With Patient Data in Influenza Surveillance.
Publication Type: Peer reviewed scientific article Authors: Laura Van Poelvoorde; Kevin Vanneste; Sigrid C.J. De Keersmaecker; Isabelle Thomas; Nina Van Goethem; Steven Van Gucht; Saelens, Xavier; Nancy Roosens Source: Front Microbiol, Volume 13 (2022) Ab ...