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Transforming Shiga toxin-producing surveillance through whole genome sequencing in food safety practices.
Nancy Roosens *; Sigrid C.J. De Keersmaecker * Source: Front Microbiol, Volume 14 (2023) Keywords: Food Safety implementation Shiga toxin-producing Escherichia coli Surveillance whole genome sequencing ...
Report on an initial assessment of long-read sequencing for metagenome (community and AMR) analysis (defined community, spiked and real simple and complex matrices) and comparison to current short-read standard
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Sigrid C.J. De Keersmaecker; Mathieu Gand; Indre Navickaite; Josephine Gruetzke; Lee-Julia Bartsch; Saria ...
Predictive model for BNT162b2 vaccine response in cancer patients based on blood cytokines and growth factors.
Vanhoutte; Bart Peeters; Silke Raats; Isolde Van der Massen; Sven De Keersmaecker; Yana Debie; Manon Huizing; Pieter Pannus; Kristof Y Neven; Ariën, Kevin K; Geert A Martens; Marc Van den Bulcke; Ella Roelant; ...
Whole-Genome Sequence Approach and Phylogenomic Stratification Improve the Association Analysis of Mutations With Patient Data in Influenza Surveillance.
Publication Type: Peer reviewed scientific article Authors: Laura Van Poelvoorde; Kevin Vanneste; Sigrid C.J. De Keersmaecker; Isabelle Thomas; Nina Van Goethem; Steven Van Gucht; Saelens, Xavier; ...
Listeria monocytogenes isolates from Cornu aspersum snails: Whole genome-based characterization and host-pathogen interactions in a snail infection model.
Publication Type: Peer reviewed scientific article Authors: Kotzamanidis, Charalampos; Malousi, Andigoni; Esmeralda Dushku; Alexandre Dobly; Sigrid C.J. De Keersmaecker; Nancy Roosens; Karathodorou, ...
Strategy and Performance Evaluation of Low-Frequency Variant Calling for SARS-CoV-2 Using Targeted Deep Illumina Sequencing
Publication Type: Peer reviewed scientific article Authors: Laura Van Poelvoorde; Thomas Delcourt; Wim Coucke; Philippe Herman; Sigrid C.J. De Keersmaecker; Saelens, Xavier; Nancy Roosens; Kevin ...
Reduced humoral immune response after BNT162b2 coronavirus disease 2019 messenger RNA vaccination in cancer patients under antineoplastic treatment.
Publication Type: Peer reviewed scientific article Authors: M Peeters; L Verbruggen; L Teuwen; G Vanhoutte; S Vande Kerckhove; B Peeters; S Raats; Isolde Van der Massen; Sigrid C.J. De Keersmaecker ...
Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak
Pochet, Brigitte; Vera Cantaert; Marchal, Kathleen; Sarah Denayer; Sigrid C.J. De Keersmaecker Source: Microbial Genomics, Volume 7, Issue 4 (2021) Keywords: food surveillance Metagenomics outbreak ...
Coverage of the national surveillance system for human Salmonella infections, Belgium, 2016-2020.
Keersmaecker; Dieter Van Cauteren; Wesley Mattheus Source: PLoS One, Volume 16, Issue 8 (2021) Keywords: Belgium Diagnostic Tests, Routine Disease Outbreaks Humans Public Health Surveillance Salmonella Salmonella ...
Whole-Genome Sequencing-Based Antimicrobial Resistance Characterization and Phylogenomic Investigation of 19 Multidrug-Resistant and Extended-Spectrum Beta-Lactamase-Positive Escherichia coli Strains Collected From Hospital Patients in Benin in 2019.
Publication Type: Peer reviewed scientific article Authors: Carine Laurence Yehouenou; Bert Bogaerts; Sigrid C.J. De Keersmaecker; Nancy Roosens; Marchal, Kathleen; Tchiakpe, Edmond; Affolabi, ...