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2019
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: as a Proof-of-Concept., Bogaerts, Bert, Winand Raf, Qiang Fu, Van Braekel Julien, Ceyssens Pieter-Jan, Mattheus Wesley, Bertrand Sophie, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , Front Microbiol, 2019, Volume 10, (2019)
Whole-Genome Sequencing of Multidrug-Resistant Escherichia coli Strains Harboring the Gene, Isolated from Seawater of the Algiers Coast in Algeria., Berrazeg, M, Deriet A, De Keersmaecker Sigrid C. J., Verhaegen Bavo, Vanneste Kevin, Botteldoorn N, Roosens Nancy, Mouffok F, and Drali R , Microbiol Resour Announc, 2019 Aug 22, Volume 8, Issue 34, (2019)
Whole-Genome Sequencing of Six Strains of Salmonella enterica Isolated from Imported Meat in Algeria., Deriet, A, Berrazeg M, De Keersmaecker Sigrid C. J., Botteldoorn N, Vanneste Kevin, Verhaegen Bavo, Roosens Nancy, Mouffok F, and Drali R , Microbiol Resour Announc, 2019 Aug 29, Volume 8, Issue 35, (2019)
2018
Application of whole genome data for in silico evaluation of primers and probes routinely employed for the detection of viral species by RT-qPCR using dengue virus as a case study., Vanneste, Kevin, Garlant Linda, Broeders Sylvia, Van Gucht Steven, and Roosens Nancy , BMC Bioinformatics, 2018 Sep 04, Volume 19, Issue 1, (2018)
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:., Saltykova, Assia, Wuyts Véronique, Mattheus Wesley, Bertrand Sophie, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , PLoS One, 2018, Volume 13, Issue 2, (2018)
Detection and discrimination of five E. coli pathotypes using a combinatory SYBR® Green qPCR screening system, Barbau-Piednoir, Elodie, Denayer Sarah, Botteldoorn N, Dierick Katelijne, De Keersmaecker Sigrid C. J., and Roosens Nancy , Applied Microbiology and Biotechnology, Jan-04-2018, Volume 102, Issue 7, Number 3285, (2018)
Development and validation of an integrated DNA walking strategy to detect GMO expressing cry genes, Fraiture, Marie-Alice, Vandamme Julie, Herman Philippe, and Roosens Nancy , BMC Biotechnology, Jan-12-2018, Volume 18, Issue 1, (2018)
Development of a bioinformatics pipeline for the routine analysis of Influenza whole genome sequencing data, Fu, Qiang, Winand Raf, Van Braekel Julien, Barbezange Cyril, Hutse Veronik, Thomas Isabelle, Van Gucht Steven, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , European Conference on Computational Biology 2018 conference (http://eccb18.org/). 8 – 12 September, 2018, Athens, Greece, (2018)
The genetic structure of the Belgian population, Van den Eynden, Jimmy, Descamps Tine, Delporte Els, Roosens Nancy, De Keersmaecker Sigrid C. J., De Wit Vanessa, Vermeesch Joris Robert, Goetghebeur Els, Tafforeau Jean, Demarest Stefaan, et al. , Human Genomics, Jan-12-2018, Volume 12, Issue 1, (2018)
High-resolution melting PCR analysis for rapid genotyping of Burkholderia mallei., Girault, G, Wattiau P, Saqib M, Martin B, Vorimore F, Singha H, Engelsma M, Roest H J., Spicic S, Grunow R, et al. , Infect Genet Evol, 2018 09, Volume 63, (2018)
Monitoring of influenza: Whole-Genome Sequencing to provide insights in the disease severity, Van Poelvoorde, Laura, De Keersmaecker Sigrid C. J., Vanneste Kevin, Van Gucht Steven, Thomas Isabelle, Saelens Xavier, Barbezange Cyril, and Roosens Nancy , The 6th International Influenza Meeting, 2-4 September 2018 Münster, Germany, (2018)
A multiplex oligonucleotide ligation-PCR method using the Luminex technology for the geno-serotyping of the most common Salmonella in Belgium, Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , ECCMID, 2018, Madrid, Spain, (2018)
Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO., Fraiture, Marie-Alice, Saltykova Assia, De Keersmaecker Sigrid C. J., and Roosens Nancy , Sci Rep, 2018 May 21, Volume 8, Issue 1, (2018)
A novel genotoxin-specific qPCR array based on the metabolically competent human HepaRG™ cell line as a rapid and reliable tool for improved in vitro hazard assessment, Ates, Gamze, Mertens Birgit, Heymans Anja, Verschaeve Luc, Milushev Dimiter, Vanparys Philippe, Roosens Nancy, De Keersmaecker Sigrid C. J., Rogiers Vera, and Doktorova Tatyana Y. , Archives of Toxicology, Jun-02-2018, (2018)
2017
Detection of Plasmid-Mediated Colistin Resistance, mcr-1 and mcr-2 Genes, in Salmonella spp. Isolated from Food at Retail in Belgium from 2012 to 2015., Garcia-Graells, Cristina, De Keersmaecker Sigrid C. J., Nguyen Quang Trung, Anthonissen R., Aerts Raf, Roosens Nancy, Dierick Katelijne, and Botteldoorn N , Foodborne Pathog Dis, 28/11/2017, (2017)
Development and performance assessment of a luminex xMAP® direct hybridization assay for the detection and identification of indoor air fungal contamination., Libert, Xavier, Packeu Ann, Bureau Fabrice, Roosens Nancy, and De Keersmaecker Sigrid C. J. , PLoS One, 2017, Volume 12, Issue 3, p.e0173390, (2017)
Development of a real-time PCR test for the geno-serotyping of Salmonella Paratyphi B and its variant Java, Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , BSFM conference, 2017, Brussels, Belgium, (2017)
Discrimination of three genetically close Aspergillus species by using high resolution melting analysis applied to indoor air as case study., Libert, Xavier, Packeu Ann, Bureau Fabrice, Roosens Nancy, and De Keersmaecker Sigrid C. J. , BMC Microbiol, 2017 Apr 04, Volume 17, Issue 1, p.84, (2017)
Evaluation of SNPs based on DNA extracted from urine as part of the development and use of a kit of non-invasive biomarkers to monitor respiratory health of young children, Nauwelaerts, S., De Cremer Koen, Bernard Alfred, Roosens Nancy, and De Keersmaecker Sigrid C. J. , qPCR dPCR & NGS 2017 Symposium, 03/04/2017, Freising, Germany , (2017)
How can we better detect unauthorized GMO in the food and feed chain, Fraiture, Marie-Alice, Herman Philippe, De Loose Marc, Debode Frédéric, and Roosens Nancy , Trends in Biotechnology, 24/03/2017, Volume 35, Issue 6, Number 517, (2017)
How to detect pathogens, leading to outbreaks, released accidentally or deliberately into the environment ? , Fraiture, Marie-Alice, Roosens Nancy, and Herman Philippe , 03/2017, Milan, Italy, (2017)
An integrated strategy combining DNA walking and NGS to detect GMO, Fraiture, Marie-Alice, Herman Philippe, Papazova N., De Loose Marc, Deforce Dieter, Ruttink Tom, and Roosens Nancy , Food Chemistry, 18/03/2017, Volume 232, Number 358, (2017)
Model-Based Classification for Digital PCR: Your Umbrella for Rain., Jacobs, Bart K. M., Goetghebeur Els, Vandesompele Jo, De Ganck Ariane, Nijs Nele, Beckers Anneleen, Papazova N., Roosens Nancy, and Clement Lieven , Anal Chem, 2017 Apr 18, Volume 89, Issue 8, p.4461-4467, (2017)
Molecular Subtyping of Salmonella Typhimurium with Multiplex Oligonucleotide Ligation-PCR (MOL-PCR)., Wuyts, Véronique, Mattheus Wesley, Roosens Nancy, Marchal Kathleen, Bertrand Sophie, and De Keersmaecker Sigrid C. J. , Methods Mol Biol, 2017, Volume 1616, p.39-69, (2017)
Salmonella infections: identification techniques for successful investigations, Bertrand, Sophie, Mattheus Wesley, Ceyssens Pieter-Jan, Gand Mathieu, Vanhoof Raymond, Botteldoorn N, Denayer Sarah, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Labinfo, 2017, Volume 16, Number 47, Belgium, (2017)

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