Résultats de la recherche - 19 results
Transforming Shiga toxin-producing surveillance through whole genome sequencing in food safety practices.
Nancy Roosens *; Sigrid C.J. De Keersmaecker * Source: Front Microbiol, Volume 14 (2023) Keywords: Food Safety implementation Shiga toxin-producing Escherichia coli Surveillance whole genome sequencing ...
Epidemiologische surveillance van shigatoxineproducerende Escherichia coli (STEC), 2019-2020
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Stéphanie Jacquinet; Florence Crombé; Denis Piérard Source: p.5 (2021) Abstract: Sinds de oprichting van het NRC in 2011 is het jaarlijks aantal gevallen van STEC in ...
Surveillance épidémiologique de l’Escherichia coli producteur de Shiga-Toxine (STEC), 2019-2020.
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Stéphanie Jacquinet; Florence Crombé; Denis Piérard Source: p.5 (0) Abstract: Depuis l’établissement du CNR en 2011, le nombre de cas annuel de STEC en Belgique est ...
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods
read mapping with SRST2. A collection of 131 STEC isolates collected from food and human sources, extensively characterized with conventional molecular methods, was used as a validation dataset. Using ...
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
shotgun sequencing of food samples, could not only reduce the turnaround time of samples in an outbreak investigation, but also allow the detection of multi-species and multi-strain outbreaks. For ...
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
Sigrid C.J. De Keersmaecker Source: Microorganisms, Volume 8, Issue 8 (2020) Keywords: food surveillance Metagenomics outbreak SNP analysis STEC whole genome Abstract: The management of a foodborne ...
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.
Vanneste; Nancy Roosens; Sigrid C.J. De Keersmaecker Source: Foods, Volume 9, Issue 8 (2020) Keywords: Food Safety foodborne outbreak investigation Shiga toxin-producing Escherichia coli STEC Surveillance WGS ...
Voedsel-en watergerelateerde infectieziekten, epidemiologische verslag, data 2017-2018
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Stéphanie Jacquinet; Dieter Van Cauteren; Sofieke Klamer; Javiera Rebolledo Source: p.14 (2020) Health Topics: Hepatitis A, B, C, D and E Hépatites A, B, C, D et E ...
infections liées aux aliments et à l'eau, synthèse épidémiologique, data 2017-2018
Publication Type: Sci. report, recommendat°, guidance doc., directive, monograph Authors: Stéphanie Jacquinet; Dieter Van Cauteren; Sofieke Klamer; Javiera Rebolledo Source: p.14 (2020) Health Topics: Hepatitis A, B, C, D and E Hépatites A, B, C, D et E ...
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates
Publication Type: Peer reviewed scientific article Authors: Stéphanie Nouws; Bert Bogaerts; Bavo Verhaegen; Sarah Denayer; Piérard, Denis; Marchal, Kathleen; Nancy Roosens; Kevin Vanneste; Sigrid C.J. De Keersmaecker Source: Scientific Reports, Volume 10, ...