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Zoekresultaten - 16 results
Shotgun metagenomics as a ONE Health tool for better protecting human health
Publication Type: Scientific poster, presentation or proceeding Authors: Mathieu Gand; Florence E Buytaers; Bram Bloemen; Assia Saltykova; Sarah Denayer; Bavo Verhaegen; Wesley Mattheus; Denis ...
Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety
Publication Type: Dissertation Authors: Assia Saltykova Source: Ghent University, Ghent, Belgium, p.308 (2022) Keywords: bioinformatics tools Database GMO Metagenomics NGS outbreak investigation ...
Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database
Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Julien Van Braekel; N. Papazova; Marie-Alice Fraiture; Deforce, Dieter; Kevin Vanneste; Sigrid C.J. De Keersmaecker; ...
Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak
Publication Type: Peer reviewed scientific article Authors: Florence E Buytaers; Assia Saltykova; Wesley Mattheus; Bavo Verhaegen; Nancy Roosens; Kevin Vanneste; Valeska Laisnez; Hammami, Naïma; ...
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies
Publication Type: Peer reviewed scientific article Authors: Florence E Buytaers; Assia Saltykova; Sarah Denayer; Bavo Verhaegen; Kevin Vanneste; Nancy Roosens; Piérard, Denis; Marchal, Kathleen; ...
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study.
Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Florence E Buytaers; Sarah Denayer; Bavo Verhaegen; Piérard, Denis; Nancy Roosens; Marchal, Kathleen; Sigrid C.J. De ...
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine.
Publication Type: Peer reviewed scientific article Authors: Florence E Buytaers; Assia Saltykova; Sarah Denayer; Bavo Verhaegen; Kevin Vanneste; Nancy Roosens; Piérard, Denis; Marchal, Kathleen; ...
Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus
Publication Type: Peer reviewed scientific article Authors: Bas Berbers; Assia Saltykova; Cristina Garcia-Graells; Philipp, Patrick; Fabrice Arella; Marchal, Kathleen; Raf Winand; Kevin Vanneste; ...
Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: as a Proof of Concept.
Publication Type: Peer reviewed scientific article Authors: Assia Saltykova; Wesley Mattheus; Sophie Bertrand; Nancy Roosens; Marchal, Kathleen; Sigrid C.J. De Keersmaecker Source: Front Microbiol, ...
Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java.
Publication Type: Peer reviewed scientific article Authors: Mathieu Gand; Wesley Mattheus; Assia Saltykova; Nancy Roosens; Katelijne Dierick; Marchal, Kathleen; Sigrid C.J. De Keersmaecker; Sophie ...