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Zoekresultaten - 65 results
The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
by studying the diversity of their strains and providing wellcharacterized biological material to the scientific community for fundamental and applied research. These microbial resource centers thus ...
Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection.
Milis; Nathalie Goeders; Sigrid C.J. De Keersmaecker; Nancy Roosens; Raf Winand; Kevin Vanneste Source: BMC Genomics, Volume 26, Issue 1 (2025) Keywords: Computational Biology Disease Outbreaks Genome, ...
Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing
This study reveals that potentially pathogenic and drug-resistant B. cereus s.l. can be present in food and feed vitamin B2 additives that are commercially available, and that more research is warranted ...
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities
reference sequence databases, on the largest collection of publicly available data for defined mock communities thus far (nine samples), representing different research domains and application scopes. Our ...
Genomic comparison between and and analysis of peptide-based biomarkers for serodiagnosis.
whole genome sequencing (WGS) was used to search for protein-coding genes to distinguish from. In addition, the population structure of the available genomic WGS datasets is described, including three ...
The ambitious plan to integrate genomics and patient data in the surveillance of infectious disease and AMR in Belgium: Experiences from be.Prepared
intended to integrate pathogen and patient data from clinical labs from the moment of validation, with genome data from the reference labs and available patient data, all the way to reporting to regional and ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
promises much lower error rates than the R9 chemistry. However, limited information is available on its performance for bacterial single-nucleotide polymorphism (SNP)-based outbreak investigation. We present ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
promises much lower error rates than the R9 chemistry. However, limited information is available on its performance for bacterial single-nucleotide polymorphism (SNP)-based outbreak investigation. We present ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
promises much lower error rates than the R9 chemistry. However, limited information is available on its performance for bacterial single-nucleotide polymorphism (SNP)-based outbreak investigation. We present ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
available on its performance for bacterial single-nucleotide polymorphism (SNP)-based outbreak investigation. We present an open-source workflow, Prokaryotic Awesome variant Calling Utility (PACU) ...