Search results - 62 results
The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics
collections Cyanobacteria Genomics Gloeobacterales Metagenomics nextflow phylogenomics Phylogeny Singularity containers Workflow Abstract: Background: Microbial culture collections play a key role in taxonomy ...
Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection.
was implemented using Galaxy, an open-source platform for data analysis and workflow creation. The Galaxy @Sciensano instance is available to both internal and external scientists and offers a wide ...
Development and implementation of novel liquid biopsy NGS panels via the OncNGS precommercial procurement (PCP) initiative
laboratory, dry laboratory, and reporting workflow in a single procedure, offering short turnaround time and reasonable cost. Results The OncNGS consortium defined criteria for a versatile, modular, ...
Chemical Characterization of Feminine Intimate Products an Extractables & Leachables Investigation
leach under typical in-use conditions. We developed a workflow akin to ISO-10993 for evaluating medical devices, consisting of three steps: (1) conducting extraction experiments under exaggerated ...
An interlaboratory proficiency test using metagenomic sequencing as a diagnostic tool for the detection of RNA viruses in swine fecal material.
material and the extracted RNA. While different mNGS workflows for the generation of mNGS data were used in the different laboratories, the bioinformatic analysis was standardized using a metagenomic read ...
Reflections of the NRL: implementation of EN ISO 11133 in food microbiology laboratories
laboratories source their culture media from suppliers to simplify their workflows and ensure high quality and batch-to-batch consistency of the media they use. This standard takes account of this development by ...
BY-COVID D5.1 Enriched report viral variants and health outcomes
Task 5.4 serve as concrete examples of adaptable and responsive workflows and methodologies designed to tackle the changing research challenges of a pandemic. The ‘Baseline Use Case’ developed in Task ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
an open-source workflow, Prokaryotic Awesome variant Calling Utility (PACU) (https://github.com/BioinformaticsPlatformWIV- ISP / PACU), for constructing SNP phylogenies using Illumina and/or ONT R9 ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
an open-source workflow, Prokaryotic Awesome variant Calling Utility (PACU) (https://github.com/BioinformaticsPlatformWIV- ISP / PACU), for constructing SNP phylogenies using Illumina and/or ONT R9 ...
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
an open-source workflow, Prokaryotic Awesome variant Calling Utility (PACU) (https://github.com/BioinformaticsPlatformWIV- ISP / PACU), for constructing SNP phylogenies using Illumina and/or ONT R9 ...