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Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety
microbiological foodborne contaminants to the strain level and with achievement of a relatedness study (phylogeny), with a focus on the applicability of the method in order to be easily implemented in reference ...
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.
PLoS One, Volume 13, Issue 2 (2018) Keywords: bacterial phylogeny; food-borne; genes; NGS; WGS; computational biology/bioinformatics; disease outbreaks; outbreak; performance evaluation; pipeline; ...