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Genomic comparison between and and analysis of peptide-based biomarkers for serodiagnosis.
Fretin, David; Marché, Silvie Source: Front Vet Sci, Volume 11 (2024) Keywords: Antigens B-cell epitopes Diagnosis Mycobacterium bovis Mycobacterium microti Tuberculosis whole-genome sequencing Abstract: In ...
Optimised long-read sequence bioinformatics tool for the analysis of the resistome and microbial communities
https://doi.org/10.5281/zenodo.7433258 Keywords: Antimicrobial resistance bioinformatics Long read metagenomic sequencing Microbial community Resistome Health Topics: Antimicrobial resistance (AMR) Food consumption and food safety ...
Metagenomic sequencing determines complete infectious bronchitis virus (avian Gammacoronavirus) vaccine strain genomes and associated viromes in chicken clinical samples.
segment B closely related to D3976 /1 from Germany, 2017) and avian orthoreovirus, while three avian orthoavulavirus 1 reads confirmed prior real-time RT- PCR result. IBV sequence variation analysis ...
Phylogenetic Analysis of Belgian Small Ruminant Lentiviruses Supports Cross Species Virus Transmission and Identifies New Subtype B5 Strains.
population. Fourteen sheep and 9 goat strains were sequenced in the and regions using the method described by Shah. Most SRLV strains from sheep and goats belonged to prototype A1 and B1 subtypes, respectively. ...
Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1.
25, Issue 6 (2019) Abstract: We analyzed the whole-genome sequence of African swine fever virus Belgium 2018/1. The strain fits into the European genotype II (>99.98% identity). The high-coverage ...
Complete coding sequence of a novel picorna-like virus in a blackbird infected with Usutu virus.
Picornaviridae Infections Plants whole genome sequencing Abstract: Using random high-throughput RNA sequencing, the complete coding sequence of a novel picorna-like virus (a 9,228-nt contig containing 212,202 ...
Genetically stable infectious Schmallenberg virus persists in foetal envelopes of pregnant ewes.
98, Issue 7, p.1630-1635 (2017) Keywords: Animals Antibodies, Viral Base Sequence Bunyaviridae Infections Chorion Female Orthobunyavirus Placenta Pregnancy RNA, Viral Sequence Analysis, RNA Sheep Sheep ...
A Tale of Tails: Dissecting the Enhancing Effect of Tailed Primers in Real-Time PCR.
Sequence analysis of the target region of these 5 isolates revealed several mutations in the inter-primer region that extend an existing hairpin structure immediately downstream of the forward primer binding ...
Extensive genetic variability linked to IS26 insertions in the fljB promoter region of atypical monophasic variants of Salmonella enterica serovar Typhimurium.
Sequence Data Mutagenesis, Insertional polymerase chain reaction Promoter Regions, Genetic Salmonella Infections Salmonella Infections, Animal Salmonella typhimurium Sequence Analysis, DNA Swine Abstract: ...
Quasispecies nature of an unusual avian paramyxovirus type-1 isolated from pigeons.
Newcastle Disease Newcastle disease virus Phosphoproteins Phylogeny RNA, Viral Sequence Analysis, DNA Sequence Homology, Nucleic Acid Viral Fusion Proteins virulence Abstract: An avian paramyxovirus type-1 ...