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Genomic epidemiology of emerging ESBL-producing Kentucky in Europe.
this clone. We dated the origin of the clone to approximately 2005 in Northern Africa, most likely in Egypt. The geographic origin predicted by the phylogenetic analysis is consistent with the patients’ ...
Comparative genomics of quinolone-resistant and susceptible Campylobacter jejuni of poultry origin from major poultry producing European countries (GENCAMP)
different phylogenetic methods, ranging from single nucleotide polymorphisms analysis to gene-by-gene approaches such as rMLST, cgMLST, wgMLST and core genome tree, provided concordant results, but it is not ...
The search for therapeutic bacteriophages uncovers one new subfamily and two new genera of Pseudomonas-infecting Myoviridae.
additional candidates infecting hosts from different species. By carrying out a phylogenetic analysis using these 21 genomes we were able to define a new subfamily of viruses, the Felixounavirinae within the ...
Trends in production of extended-spectrum beta-lactamases among Enterobacteriaceae of clinical interest: results of a nationwide survey in Belgian hospitals.
characterized by PCR mapping. Selected isolates were genotyped by PFGE, multilocus sequence typing analysis and phylogenetic grouping by PCR. RESULTS: overall, 733 isolates were confirmed as ESBL producers. ...
Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198.
an emerging problem within this serotype. We used whole-genome sequencing (WGS) to investigate the phylogenetic structure and AMR content of 121 S.enterica serotype Kentucky sequence type 198 isolates ...