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2020
Perceived utility and feasibility of pathogen genomics for public health practice: a survey among public health professionals working in the field of infectious diseases, Belgium, 2019, Van Goethem, Nina, Struelens M. J., De Keersmaecker Sigrid C. J., Roosens Nancy, Robert A., Quoilin Sophie, Van Oyen Herman, and Devleesschauwer Brecht , BMC Public Health, Jan-12-2020, Volume 20, Issue 1, (2020)
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine., Buytaers, Florence E., Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Vanneste Kevin, Roosens Nancy, Piérard Denis, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Microorganisms, 2020 Aug 05, Volume 8, Issue 8, (2020)
Screening strategy targeting the presence of food enzyme-producing fungi in food enzyme preparations, Deckers, Marie, Vanneste Kevin, Winand Raf, Hendrickx Marijke, Becker Pierre, De Keersmaecker Sigrid C. J., Deforce Dieter, Fraiture Marie-Alice, and Roosens Nancy , Food Control, Jan-11-2020, Volume 117, (2020)
Selection of a Noninvasive Source of Human DNA Envisaging Genotyping Assays in Epidemiological Studies: Urine or Saliva?, Nauwelaerts, S., Van Geel D., Delvoye Maud, De Cremer Koen, Bernard Alfred, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Journal of Biomolecular Techniques : JBT, Jan-04-2020, Volume 31, Issue 1, (2020)
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study., Saltykova, Assia, Buytaers Florence E., Denayer Sarah, Verhaegen Bavo, Piérard Denis, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Int J Mol Sci, 2020 Aug 08, Volume 21, Issue 16, (2020)
Strategy for the identification of micro-organisms producing food and feed products: Bacteria producing food enzymes as study case, Deckers, Marie, Vanneste Kevin, Winand Raf, De Keersmaecker Sigrid C. J., Denayer Sarah, Heyndrickx Marc, Deforce Dieter, Fraiture Marie-Alice, and Roosens Nancy , Food Chemistry, Jan-02-2020, Volume 305, (2020)
Use of Whole Genome Sequencing Data for a First in Silico Specificity Evaluation of the RT-qPCR Assays Used for SARS-CoV-2 Detection., Gand, Mathieu, Vanneste Kevin, Thomas Isabelle, Van Gucht Steven, Capron Arnaud, Herman Philippe, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Int J Mol Sci, 2020 Aug 04, Volume 21, Issue 15, (2020)
Whole-genome sequencing of serotype 4b isolated from ready-to-eat lentil salad in Algiers, Algeria., Drali, R, Deriet A, Verhaegen Bavo, De Keersmaecker Sigrid C. J., Botteldoorn N, Vanneste Kevin, Roosens Nancy, and Mouffok F , New Microbes New Infect, 2020 Jan, Volume 33, (2020)
2019
Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: as a Proof of Concept., Saltykova, Assia, Mattheus Wesley, Bertrand Sophie, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Front Microbiol, 2019, Volume 10, (2019)
Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java., Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , Appl Microbiol Biotechnol, 2019 Jun, Volume 103, Issue 12, (2019)
Exploiting the Advantages of Molecular Tools for the Monitoring of Fungal Indoor Air Contamination: First Detection of in Indoor Air of Air-Conditioned Offices., Libert, Xavier, Chasseur Camille, Packeu Ann, Bureau Fabrice, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Microorganisms, 2019 Dec 10, Volume 7, Issue 12, (2019)
MinION sequencing technology to characterize unauthorized GM petunia plants circulating on the European Union market, Fraiture, Marie-Alice, Ujhelyi Gabriella, Ovesna Jaroslava, Van Geel D., De Keersmaecker Sigrid C. J., Saltykova Assia, Papazova N., and Roosens Nancy , Scientific reports, Volume 9, Issue 7141, (2019)
Shifting national surveillance of Shigella infections toward geno-serotyping by the development of a tailored Luminex assay and NGS workflow., Ventola, Eleonora, Bogaerts Bert, De Keersmaecker Sigrid C. J., Vanneste Kevin, Roosens Nancy, Mattheus Wesley, and Ceyssens Pieter-Jan , Microbiologyopen, 2019 Mar 28, (2019)
SPECENZYM : A project to study the purity of food enzymes, Deckers, Marie, Vanneste Kevin, Denayer Sarah, De Keersmaecker Sigrid C. J., Heyndrickx M, De Loose M, Berben G, Debode F, Papazova N., Fox P, et al. , 2019, (2019)
Suspected Kingella Kingae outbreak in a Belgian Day-Care Center, Wyndham-Thomas, Chloé, Boreux Myriam, Schirvel Carole, Senterre Jean-Marc, De Keersmaecker Sigrid C. J., Quoilin Sophie, and Frère Julie , ESPID , (2019)
Targeting the 16S rRNA gene for bacterial identification in complex mixed samples: comparative evaluation of second (Illumina) and third (Oxford Nanopore Technologies) generation sequencing technologies., Winand, Raf, Bogaerts Bert, Hoffman Stefan, Lefèvre Loic, Delvoye Maud, Van Braekel Julien, Qiang Fu, Roosens Nancy, De Keersmaecker Sigrid C. J., and Vanneste Kevin , Int J Mol Sci, 2019 Dec 31, Volume 21, Issue 1, (2019)
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: as a Proof-of-Concept., Bogaerts, Bert, Winand Raf, Qiang Fu, Van Braekel Julien, Ceyssens Pieter-Jan, Mattheus Wesley, Bertrand Sophie, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , Front Microbiol, 2019, Volume 10, (2019)
Whole-Genome Sequencing of Multidrug-Resistant Escherichia coli Strains Harboring the Gene, Isolated from Seawater of the Algiers Coast in Algeria., Berrazeg, M, Deriet A, De Keersmaecker Sigrid C. J., Verhaegen Bavo, Vanneste Kevin, Botteldoorn N, Roosens Nancy, Mouffok F, and Drali R , Microbiol Resour Announc, 2019 Aug 22, Volume 8, Issue 34, (2019)
Whole-Genome Sequencing of Six Strains of Salmonella enterica Isolated from Imported Meat in Algeria., Deriet, A, Berrazeg M, De Keersmaecker Sigrid C. J., Botteldoorn N, Vanneste Kevin, Verhaegen Bavo, Roosens Nancy, Mouffok F, and Drali R , Microbiol Resour Announc, 2019 Aug 29, Volume 8, Issue 35, (2019)
2018
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:., Saltykova, Assia, Wuyts Véronique, Mattheus Wesley, Bertrand Sophie, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , PLoS One, 2018, Volume 13, Issue 2, (2018)
Detection and discrimination of five E. coli pathotypes using a combinatory SYBR® Green qPCR screening system, Barbau-Piednoir, Elodie, Denayer Sarah, Botteldoorn N, Dierick Katelijne, De Keersmaecker Sigrid C. J., and Roosens Nancy , Applied Microbiology and Biotechnology, Jan-04-2018, Volume 102, Issue 7, Number 3285, (2018)
Development of a bioinformatics pipeline for the routine analysis of Influenza whole genome sequencing data, Fu, Qiang, Winand Raf, Van Braekel Julien, Barbezange Cyril, Hutse Veronik, Thomas Isabelle, Van Gucht Steven, De Keersmaecker Sigrid C. J., Roosens Nancy, and Vanneste Kevin , European Conference on Computational Biology 2018 conference (http://eccb18.org/). 8 – 12 September, 2018, Athens, Greece, (2018)
The genetic structure of the Belgian population, Van den Eynden, Jimmy, Descamps Tine, Delporte Els, Roosens Nancy, De Keersmaecker Sigrid C. J., De Wit Vanessa, Vermeesch Joris Robert, Goetghebeur Els, Tafforeau Jean, Demarest Stefaan, et al. , Human Genomics, Jan-12-2018, Volume 12, Issue 1, (2018)
High-resolution melting PCR analysis for rapid genotyping of Burkholderia mallei., Girault, G, Wattiau P, Saqib M, Martin B, Vorimore F, Singha H, Engelsma M, Roest H J., Spicic S, Grunow R, et al. , Infect Genet Evol, 2018 09, Volume 63, (2018)
Monitoring of influenza: Whole-Genome Sequencing to provide insights in the disease severity, Van Poelvoorde, Laura, De Keersmaecker Sigrid C. J., Vanneste Kevin, Van Gucht Steven, Thomas Isabelle, Saelens Xavier, Barbezange Cyril, and Roosens Nancy , The 6th International Influenza Meeting, 2-4 September 2018 Münster, Germany, (2018)

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