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2020
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country., Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Crombé Florence, De Rauw Klara, Piérard Denis, Marchal Kathleen, Vanneste Kevin, Roosens Nancy, et al. , Foods, 2020 Aug 01, Volume 9, Issue 8, (2020)
Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus, Berbers, Bas, Saltykova Assia, Garcia-Graells Cristina, Philipp Patrick, Arella Fabrice, Marchal Kathleen, Winand Raf, Vanneste Kevin, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Scientific Reports, Jan-12-2020, Volume 10, Issue 1, (2020)
Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination., Berbers, Bas, Ceyssens Pieter-Jan, Bogaerts Pierre, Vanneste Kevin, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Antibiotics (Basel), 2020 Aug 11, Volume 9, Issue 8, (2020)
First detection of a plasmid located carbapenem resistant blaVIM-1 gene in E. coli isolated from meat products at retail in Belgium in 2015, Garcia-Graells, Cristina, Berbers Bas, Verhaegen Bavo, Vanneste Kevin, Marchal Kathleen, Roosens Nancy, Botteldoorn N, and De Keersmaecker Sigrid C. J. , International Journal of Food Microbiology, Jan-07-2020, Volume 324, (2020)
Food Chemistry, Function and AnalysisDNA Techniques to Verify Food Authenticity CHAPTER 8. GMO Detection and Identification Using Next-generation Sequencing, Fraiture, Marie-Alice, Papazova N., Vanneste Kevin, De Keersmaecker Sigrid C. J., and Roosens Nancy , 2020, Cambridge, p.96 - 106, (2020)
Gender‐dependent association between exhaled nitric oxide and the CC16 38AA genotype in young school children, Nauwelaerts, S., Roosens Nancy, De Cremer Koen, Bernard Alfred, and De Keersmaecker Sigrid C. J. , Immunity, Inflammation and Disease, Jun-08-2020, (2020)
Genomic epidemiology of emerging ESBL-producing Kentucky in Europe., Coipan, Claudia E., Westrell Therese, van Hoeck Angela H. A. M., Alm Erik, Kotila Saara, Berbers Bas, De Keersmaecker Sigrid C. J., Ceyssens Pieter-Jan, Borg Maria Louise, Chattaway Marie, et al. , Emerg Microbes Infect, 2020 Dec, Volume 9, Issue 1, (2020)
A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium., Gand, Mathieu, Mattheus Wesley, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, Bertrand Sophie, and De Keersmaecker Sigrid C. J. , Food Microbiol, 2020 Oct, Volume 91, (2020)
Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing., Fraiture, Marie-Alice, Bogaerts Bert, Winand Raf, Deckers Marie, Papazova N., Vanneste Kevin, De Keersmaecker Sigrid C. J., and Roosens Nancy , Sci Rep, 2020 04 27, Volume 10, Issue 1, (2020)
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates, Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Piérard Denis, Marchal Kathleen, Roosens Nancy, Vanneste Kevin, and De Keersmaecker Sigrid C. J. , Scientific Reports, Jan-12-2020, Volume 10, Issue 1, (2020)
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates., Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Piérard Denis, Marchal Kathleen, Roosens Nancy, Vanneste Kevin, and De Keersmaecker Sigrid C. J. , Sci Rep, 2020 09 04, Volume 10, Issue 1, (2020)
Isolation of Drug-Resistant Gallibacterium anatis from Calves with Unresponsive Bronchopneumonia, Belgium., Van Driessche, Laura, Vanneste Kevin, Bogaerts Bert, De Keersmaecker Sigrid C. J., Roosens Nancy, Haesebrouck Freddy, De Cremer Lieze, Deprez Piet, Pardon Bart, and Boyen Filip , Emerg Infect Dis, 2020 04, Volume 26, Issue 4, (2020)
A multiplex oligonucleotide ligation-PCR method for the genoserotyping of common Salmonella using a liquid bead suspension assay, Gand, Mathieu, Mattheus Wesley, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , Food Microbiology, Jan-05-2020, Volume 87, (2020)
NGS for (Hemato-) Oncology in Belgium: Evaluation of Laboratory Performance and Feasibility of a National External Quality Assessment Program, Delcourt, Thomas, Vanneste Kevin, Soumali Mohamed Rida, Coucke Wim, Ghislain V, Hébrant Aline, Van Valckenborgh Els, De Keersmaecker Sigrid C. J., Roosens Nancy, Van de Walle P, et al. , Cancers, Jan-11-2020, Volume 12, Issue 11, (2020)
Perceived utility and feasibility of pathogen genomics for public health practice: a survey among public health professionals working in the field of infectious diseases, Belgium, 2019, Van Goethem, Nina, Struelens Marc J., De Keersmaecker Sigrid C. J., Roosens Nancy, Robert Annie, Quoilin Sophie, Van Oyen Herman, and Devleesschauwer Brecht , BMC Public Health, Jan-12-2020, Volume 20, Issue 1, (2020)
Perceived utility and feasibility of pathogen genomics for public health practice: a survey among public health professionals working in the field of infectious diseases, Belgium, 2019, Van Goethem, Nina, Struelens M. J., De Keersmaecker Sigrid C. J., Roosens Nancy, Robert A., Quoilin Sophie, Van Oyen Herman, and Devleesschauwer Brecht , BMC Public Health, Jan-12-2020, Volume 20, Issue 1, (2020)
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine., Buytaers, Florence E., Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Vanneste Kevin, Roosens Nancy, Piérard Denis, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Microorganisms, 2020 Aug 05, Volume 8, Issue 8, (2020)
Screening strategy targeting the presence of food enzyme-producing fungi in food enzyme preparations, Deckers, Marie, Vanneste Kevin, Winand Raf, Hendrickx Marijke, Becker Pierre, De Keersmaecker Sigrid C. J., Deforce Dieter, Fraiture Marie-Alice, and Roosens Nancy , Food Control, Jan-11-2020, Volume 117, (2020)
Selection of a Noninvasive Source of Human DNA Envisaging Genotyping Assays in Epidemiological Studies: Urine or Saliva?, Nauwelaerts, S., Van Geel D., Delvoye Maud, De Cremer Koen, Bernard Alfred, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Journal of Biomolecular Techniques : JBT, Jan-04-2020, Volume 31, Issue 1, (2020)
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study., Saltykova, Assia, Buytaers Florence E., Denayer Sarah, Verhaegen Bavo, Piérard Denis, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Int J Mol Sci, 2020 Aug 08, Volume 21, Issue 16, (2020)
Strategy for the identification of micro-organisms producing food and feed products: Bacteria producing food enzymes as study case, Deckers, Marie, Vanneste Kevin, Winand Raf, De Keersmaecker Sigrid C. J., Denayer Sarah, Heyndrickx Marc, Deforce Dieter, Fraiture Marie-Alice, and Roosens Nancy , Food Chemistry, Jan-02-2020, Volume 305, (2020)
Use of Whole Genome Sequencing Data for a First in Silico Specificity Evaluation of the RT-qPCR Assays Used for SARS-CoV-2 Detection., Gand, Mathieu, Vanneste Kevin, Thomas Isabelle, Van Gucht Steven, Capron Arnaud, Herman Philippe, Roosens Nancy, and De Keersmaecker Sigrid C. J. , Int J Mol Sci, 2020 Aug 04, Volume 21, Issue 15, (2020)
Whole-genome sequencing of serotype 4b isolated from ready-to-eat lentil salad in Algiers, Algeria., Drali, R, Deriet A, Verhaegen Bavo, De Keersmaecker Sigrid C. J., Botteldoorn N, Vanneste Kevin, Roosens Nancy, and Mouffok F , New Microbes New Infect, 2020 Jan, Volume 33, (2020)
2019
Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: as a Proof of Concept., Saltykova, Assia, Mattheus Wesley, Bertrand Sophie, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Front Microbiol, 2019, Volume 10, (2019)
Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java., Gand, Mathieu, Mattheus Wesley, Saltykova Assia, Roosens Nancy, Dierick Katelijne, Marchal Kathleen, De Keersmaecker Sigrid C. J., and Bertrand Sophie , Appl Microbiol Biotechnol, 2019 Jun, Volume 103, Issue 12, (2019)

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