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2022
BSFM 2022 - International outbreak of Salmonella Typhimurium linked to a chocolate factory in 2022: Belgian findings, Delbrassinne, Laurence , BSFM, 2022/10, Brussels, Belgium, p.1, (2022)
ESCAIDE 2022 Oral presentation: International outbreak of Salmonella Typhimurium linked to a chocolate factory in 2022: Belgian findings, Laisnez, Valeska, Cantaert Vera, Delbrassinne Laurence, de Muylder Géraldine, Dierinck Tiffany, Hammami Naïma, Jaramillo Veronica, Mattheus Wesley, Nauwelaers Inne, Verhaegen Bavo, et al. , ESCAIDE, 2022-11-25, (2022)
Introduction of WGS in food microbiology: advantages and challenges, Verhaegen, Bavo, Botteldoorn N, Cantaert Vera, de Zutter Lieven, Delcenserie Véronique, Geeraerd Annemie, Mahillon Jacques, Mori Marcella, Pochet Brigitte, Roosens Nancy, et al. , 26th Conference on Food Microbiology, 10/2022, Brussels, Belgium, (2022)
The key role of WGS-based surveillance of Listeria monocytogenes in both human and food isolates in outbreak investigations, Van den Bossche, An, De Keersmaecker Sigrid C. J., Mattheus Wesley, Roosens Nancy, Bogaerts Bert, Vanneste Kevin, Van Hoorde Koenraad, and Verhaegen Bavo , 26th Conference on Food Microbiology, 13-14/10/2022, Issue BSFM, Brussels, Belgium, (2022)
Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study, Buytaers, Florence E., Verhaegen Bavo, Gand Mathieu, D'aes Jolien, Vanneste Kevin, Roosens Nancy, Marchal Kathleen, Denayer Sarah, and De Keersmaecker Sigrid C. J. , Foods, Jan-11-2022, Volume 11, Issue 21, (2022)
SARS-CoV-2 Surveillance in Belgian Wastewaters, Janssens, Raphael, Hanoteaux Sven, Maloux Hadrien, Klamer Sofieke, Laisnez Valeska, Verhaegen Bavo, Linard Catherine, Lahousse Lies, Delputte Peter, Terwagne Matthieu, et al. , Viruses, 02-09-2022, Volume 14, Issue 9, (2022)
Shotgun metagenomics as a ONE Health tool for better protecting human health, Gand, Mathieu, Buytaers Florence E., Bloemen Bram, Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Mattheus Wesley, Piérard Denis, Bogaerts Bert, Marchal Kathleen, et al. , EFSA One, 21/06/2022, Issue EFSA, (2022)
Toxi-infections alimentaires en Belgique - Rapport annuel 2021, Delbrassinne, Laurence, Verhaegen Bavo, Van Damme Inge, and Van Hoorde Koenraad , 12/2022, Brussels, Belgium, p.41, (2022)
Voedselvergiftigingen in België en Vlaanderen - Jaaroverzicht 2021,, Delbrassinne, Laurence, Verhaegen Bavo, Van Damme Inge, and Van Hoorde Koenraad , 2022, Belgium, p.42, (2022)
Voedselvergiftigingen in België - Jaaroverzicht 2021, Delbrassinne, Laurence, Verhaegen Bavo, Van Damme Inge, and Van Hoorde Koenraad , 12/2022, Brussels, Belgium, p.41, (2022)
2021
Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak, Buytaers, Florence E., Saltykova Assia, Mattheus Wesley, Verhaegen Bavo, Roosens Nancy, Vanneste Kevin, Laisnez Valeska, Hammami Naïma, Pochet Brigitte, Cantaert Vera, et al. , Microbial Genomics, Jul-04-2021, Volume 7, Issue 4, (2021)
Strategy to Develop and Evaluate a Multiplex RT-ddPCR in Response to SARS-CoV-2 Genomic Evolution., Van Poelvoorde, Laura, Gand Mathieu, Fraiture Marie-Alice, De Keersmaecker Sigrid C. J., Verhaegen Bavo, Van Hoorde Koenraad, Cay Ann Brigitte, Balmelle Nadège, Herman Philippe, and Roosens Nancy , Curr Issues Mol Biol, 2021 Nov 06, Volume 43, Issue 3, (2021)
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies, Buytaers, Florence E., Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Vanneste Kevin, Roosens Nancy, Piérard Denis, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Frontiers in Microbiology, May-11-2021, Volume 12, (2021)
Toxi-infections alimentaires en Belgique - Rapport annuel 2020, Delbrassinne, Laurence, Verhaegen Bavo, Denayer Sarah, and Van Hoorde Koenraad , 12/2021, Brussels, Belgium, p.41, (2021)
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods, Bogaerts, Bert, Nouws Stéphanie, Verhaegen Bavo, Denayer Sarah, Van Braekel Julien, Winand Raf, Fu Qiang, Crombé Florence, Piérard Denis, Marchal Kathleen, et al. , Microbial Genomics, Jan-03-2021, Volume 7, Issue 3, (2021)
Voedselvergiftigingen in België - Jaaroverzicht 2020, Delbrassinne, Laurence, Verhaegen Bavo, Denayer Sarah, and Van Hoorde Koenraad , 12/2021, Brussels, Belgium, p.41, (2021)
Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning Outbreaks, Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Laeremans Lasse, Marchal Kathleen, Roosens Nancy, Vanneste Kevin, and De Keersmaecker Sigrid C. J. , Frontiers in Microbiology, Feb-11-2021, Volume 12, (2021)
2020
The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country., Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Crombé Florence, De Rauw Klara, Piérard Denis, Marchal Kathleen, Vanneste Kevin, Roosens Nancy, et al. , Foods, 2020 Aug 01, Volume 9, Issue 8, (2020)
First detection of a plasmid located carbapenem resistant blaVIM-1 gene in E. coli isolated from meat products at retail in Belgium in 2015, Garcia-Graells, Cristina, Berbers Bas, Verhaegen Bavo, Vanneste Kevin, Marchal Kathleen, Roosens Nancy, Botteldoorn N, and De Keersmaecker Sigrid C. J. , International Journal of Food Microbiology, Jan-07-2020, Volume 324, (2020)
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates., Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Piérard Denis, Marchal Kathleen, Roosens Nancy, Vanneste Kevin, and De Keersmaecker Sigrid C. J. , Sci Rep, 2020 09 04, Volume 10, Issue 1, (2020)
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates, Nouws, Stéphanie, Bogaerts Bert, Verhaegen Bavo, Denayer Sarah, Piérard Denis, Marchal Kathleen, Roosens Nancy, Vanneste Kevin, and De Keersmaecker Sigrid C. J. , Scientific Reports, Jan-12-2020, Volume 10, Issue 1, (2020)
A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine., Buytaers, Florence E., Saltykova Assia, Denayer Sarah, Verhaegen Bavo, Vanneste Kevin, Roosens Nancy, Piérard Denis, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Microorganisms, 2020 Aug 05, Volume 8, Issue 8, (2020)
Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study., Saltykova, Assia, Buytaers Florence E., Denayer Sarah, Verhaegen Bavo, Piérard Denis, Roosens Nancy, Marchal Kathleen, and De Keersmaecker Sigrid C. J. , Int J Mol Sci, 2020 Aug 08, Volume 21, Issue 16, (2020)
Toxi-infections alimentaires en Belgique - Rapport annuel 2019, Denayer, Sarah, Verhaegen Bavo, and Van Hoorde Koenraad , 2020, Number 43, p.43, (2020)
Voedselvergiftigingen in Belgie en Vlaanderen - Jaaroverzicht 2019, Denayer, Sarah, Verhaegen Bavo, and Van Hoorde Koenraad , 04/2020, Number 42, Brussels, Belgium, p.42, (2020)

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